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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGCTATTTGGAGACAGCTTCAAAGATCTCAATACCAAATGCAATACAGTCAGCCTGTTCGAATAGTTGTTTGGATTGTTGTTCTCCTTTGTTTCATTGgtaagctgttgttatgattgtatgtatactatactgtattcctacatacattgtatgtacttgcatgcagcggaatttctaatgaataacttcttactat...

Basic information

species Glycine max
transcript GLYMA17G35500.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35500.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g09380.t01 (Vitis vinifera), 5'ss of exon 4
---GGTGCTATTTGGAGACAGCTTCAAAGATCTCAATACCAAATGCAATACAGTCAGCCTGTTCGAATAGTTGTTTGGATTGTTGTTCTCCTTTGTTTCATTGgtaagctgttgttatgattgtatgtat-actatactgtattcctacatacattgtatgtacttgcatgcagcggaatttctaatgaataacttcttactat-----
   || |||||    |||||||||||||| ||||| || ||||||||||| |||| |||| ||| | |     ||||||| | |   |||||||| || ||||||    ||||    | | | ||| ||  |  ||  ||| |||  ||||  ||  ||||||  || || |       ||| |  | ||||  || | | | |     
TATGGAGCTATGCAAAGACAGCTTCAAAGGTCTCAGTATCAAATGCAATATAGTCGGCCTATTCAAGTGACATTTTGGATCGCT---CTCCTTTGCTTGATTGgtg---tgtttccctaactctatctaggaacattttgt-ttcacacatttatcatatgtatatggatcctttaccttttttcctcaata--ttatgattttcagca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27427081|gb|CA938601.1|CA938601
EST:     TCAGTCTGTTCGAATAGTTGTTTGGATTGTTGTTCTCCTTTGTTTCATTG                         CTTTAATTGCATTCCATGCAATGTAG
genomic: TCAGCCTGTTCGAATAGTTGTTTGGATTGTTGTTCTCCTTTGTTTCATTGgtaagctgtt ... tatcctgcagCTTTAATTGCATTCCATGCAATGTAG