1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtatttatatctcattcttatacttcacctttgtcaacatttgaaattcattctgtgatttataatatgctgcagGTGAACAAGGAAGAGGATGAGAAGATGAGGACAAATGCTGCAAATGTTGCTGCTCGTGCTGCTTATGGGGGAGATGACATGATGTCAAAATGGCAACTTA
species | Glycine max |
transcript | GLYMA17G35470.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GAGTTGATGGTGACAAGGAGAAGGACGACGGCCGTGGTAAATCAACAAAG GTGAACAAGGAAGAGGATGAGAAGATGAGGACAAAEST: gi|17401448|gb|BM178230.1|BM178230
genomic: GAGTTGATGGTGACAAGGAGAAGGACGACGGCCGTGGTAAATCAACAAAGgtatttatat ... tatgctgcagGTGAACAAGGAAGAGGATGAGAAGATGAGGACAAA
EST: GACTTGATGGTGACAAGGAGAAGGACGACGGCCGTGGTAAATCAATAAAG GTGAACAAGGAAGAGGATGAGAAGATGAGGACAAATGCTGCAAATGTTGCTEST: gi|7925925|gb|AW831951.1|AW831951
genomic: GAGTTGATGGTGACAAGGAGAAGGACGACGGCCGTGGTAAATCAACAAAGgtatttatat ... tatgctgcagGTGAACAAGGAAGAGGATGAGAAGATGAGGACAAATGCTGCAAATGTTGCT
EST: GAGTTGATGGTGACAAGGAGAAGGACGACGGCCGTGGTAAATCAACAAAG GTGAACAAGGAAGAGGATGAGAAGATGAGGACAAATGCTGCAAATGTTGCT
genomic: GAGTTGATGGTGACAAGGAGAAGGACGACGGCCGTGGTAAATCAACAAAGgtatttatat ... tatgctgcagGTGAACAAGGAAGAGGATGAGAAGATGAGGACAAATGCTGCAAATGTTGCT
tacttcacctttgtcaacatttgaaattcattctgtgatttataatatgctgcagGTGAACAAGGAAGAGGATGAGAAGATGAGGACAAATGCTGCAAATGTTGCTGCTCGTGCTGCTTATGGGGGAGATGACATGATGTCAAAATGGCAACTTA
tgtgatttataatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttatatctcattcttatacttcacctttgtcaacatttgaaattcattctgtgatttataatatgctgcagGTGAACAAGGAAGAGGATGAGAAGATGAGGACAAATGCTGCAAATGTTGCTGCTCGTGCTGCTTATGGGGGAGATGACATGATGTCAAAATGGCAACTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG