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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACGTCGGCCACTCCATCTCCGCCATGATCGGCATGCTCGCCTCCATCCGCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagtaattctcttctccctcctcaattctattctattctattctattctatgcgagcaaataggagcaattagcgcttgaatttctcaga

Basic information

species Glycine max
transcript GLYMA17G35360.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35360.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g10620.3 (Oryza sativa), 5'ss of exon 1
-CTACGTCGGCCACTCCATCTCCGCCATGATCGGCATGCTCGCCTCCATCCGCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagtaattctcttctccctcctcaattctattctattctattctattctatgcgagcaaataggagcaattagcgcttgaatttctcaga--
 || ||||||||||||| ||||||||||||||||||| |||||||||||||| || || ||||||||| |||| ||  |||||||||||||||| ||  |||||          || ||||  |       | ||  ||||      |   |||  ||  || |      || |    ||| |    || | |  |   
CCTTCGTCGGCCACTCCGTCTCCGCCATGATCGGCATCCTCGCCTCCATCCGACGACCTGACCTCTTCGCCAAGCTTGTCCTCATCGGCGCCTCTCCCCGgtacg--------ctcgcttccactgatgtgaatcctttctcgctcttaaaattgaatctgatcgggggcgatcggggagcacggacatgtgtgtgcag

upper sequence: GLYMA17G35360.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G008751_T01 (Zea mays), 5'ss of exon 1
-CTACGTCGGCCACTCCATCTCCGCCATGATCGGCATGCTCGCCTCCATCCGCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaa-gtaattctcttctccctcctcaattctattctattctatt---ctattctatgcgag--caaataggagcaattagcgcttgaatttctcaga----
 || |||||| |||||| | ||||||||||||||||| |||||||||||||||||||| || |||||| |||| ||| ||||||||||||| || || |||||  |    || ||    |||   |   ||  |   | |||   | |     | |  || ||        |||  ||  ||||   ||  |       ||      
CCTTCGTCGGGCACTCCGTGTCCGCCATGATCGGCATCCTCGCCTCCATCCGCCGCCCCGAGCTCTTCGCCAAGCTCGTCCTCATCGGCGCGTCGCCCAGgtaacatggcgtgatcggattcgttcggttcggtctcactctcaccaaccggcccagcctctggagagtttaatttgatgaattccggcccgggcactgcactgcag

upper sequence: GLYMA17G35360.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g09140.t01 (Vitis vinifera), 5'ss of exon 1
-CTACGTCGGCCACTCCATCTCCGCCATGATCGGCATGCTCGCCTCCATCCGCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagtaattctcttctccctcctcaattctattctattctattctattctatgcgagcaaataggagcaattagcgcttgaatttctcaga------------------------------------------------------------
  || |||||||||||| ||||||||||||| || || || || ||||| ||||||||||| |||||| | |||||| | |||||||| || || || ||||| | | |   |              | |||    |||   |   ||    |  | |||||  | |   | |   ||     ||   ||| |                                                                
CTTATGTCGGCCACTCCGTCTCCGCCATGATTGGGATTCTGGCTTCCATTCGCCGCCCGGAGCTCTTCACTAAACTCGTACTCATCGGTGCTTCTCCCAGgta-atcgaaagaaagaaaaaggaaaacccaaaaaaattgggtgtgatgaattcatttgcgaatacacgtggggggttttttttttttttttttcttctaattttcttgctaaccaaacaaaaagacccaaatttgctccgaaatttgtgcactcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26047534|gb|CA784292.1|CA784292
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|26047534|gb|CA784292.1|CA784292
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|26047534|gb|CA784292.1|CA784292
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|26047534|gb|CA784292.1|CA784292
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|26047534|gb|CA784292.1|CA784292
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|26047534|gb|CA784292.1|CA784292
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|26047534|gb|CA784292.1|CA784292
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|26047534|gb|CA784292.1|CA784292
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|26047534|gb|CA784292.1|CA784292
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|26047534|gb|CA784292.1|CA784292
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|213607093|gb|DB957069.1|DB957069
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGA                         TTCCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGAGAAATCGAG
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcagaTTCCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGAGAAATCGAG
EST: gi|7147384|gb|AW509306.1|AW509306
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGA                         TTCCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGAGAAATCGAG
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcagaTTCCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGAGAAATCGAG
EST: gi|13790117|gb|BG652708.1|BG652708
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|13790117|gb|BG652708.1|BG652708
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|13790117|gb|BG652708.1|BG652708
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|13790117|gb|BG652708.1|BG652708
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|13790117|gb|BG652708.1|BG652708
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|13790117|gb|BG652708.1|BG652708
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|13790117|gb|BG652708.1|BG652708
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|13790117|gb|BG652708.1|BG652708
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|13790117|gb|BG652708.1|BG652708
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|13790117|gb|BG652708.1|BG652708
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         T
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcaga-
EST: gi|20075392|gb|BQ094175.1|BQ094175
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         TACAACAAATTCCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGA
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcagaT--------T-CCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGA
EST: gi|18690813|gb|BM519661.1|BM519661
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         TACAACAAATTCCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGA
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcagaT--------T-CCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGA
EST: gi|208215789|gb|GE009775.1|GE009775
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGA                         TTCCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGAGAAATCGAG
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcagaTTCCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGAGAAATCGAG
EST: gi|213596654|gb|DB956046.1|DB956046
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         TACAACAAATTCCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGA
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcagaT--------T-CCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGA
EST: gi|209705615|gb|BW673584.1|BW673584
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         TACAACAAATTCCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGA
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcagaT--------T-CCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGA
EST: gi|213587068|gb|DB961763.1|DB961763
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGG                         TACAACAAATTCCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGA
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcagaT--------T-CCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGA
EST: gi|213592146|gb|DB965965.1|DB965965
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGA                         TTCCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGAGAAATCGAG
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcagaTTCCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGAGAAATCGAG
EST: gi|5761228|gb|AI966591.1|AI966591
EST:     GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGA                         TTCCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGAGAAATCGAG
genomic: GCCGCCCGGACCTCTTCTCCAAACTCATCCTCATCGGCGCCTCCCCTAGGtacaacaagt ... atttctcagaTTCCTGAACGACAAGGACTACCACGGGGGATTTGAGCAGGGAGAAATCGAG