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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGAGAGGCTGGCCGGGAGGAAGTGGGAGCCTCAGCATTTTGTCAAGATTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatcactctcaattgttgttttttgtgctcaattgtgttctcagtggtgatttgatacctttcatgtgtgatttgatgattgatgatttgatgt...

Basic information

species Glycine max
transcript GLYMA17G35280.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193321675|gb|FK284103.1|FK284103
EST:     TTGTCAACTGCTCGCCGACTCCGGCGCGG-CCTTGCAGGGCCTGTGGAAG                         GGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
genomic: TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatc ... attgttgcagGGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
EST: gi|208223501|gb|GE022198.1|GE022198
EST:     TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAG                         GGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGAATAG
genomic: TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatc ... attgttgcagGGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGA-T-G
EST: gi|193430633|gb|FK392389.1|FK392389
EST:     TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAG                         GGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
genomic: TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatc ... attgttgcagGGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
EST: gi|193620644|gb|FK569894.1|FK569894
EST:     TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAG                         GGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
genomic: TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatc ... attgttgcagGGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
EST: gi|208289478|gb|GE085841.1|GE085841
EST:     TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAG                         GGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
genomic: TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatc ... attgttgcagGGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
EST: gi|208135669|gb|GD938754.1|GD938754
EST:     TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAG                         GGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
genomic: TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatc ... attgttgcagGGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
EST: gi|193347425|gb|FK309419.1|FK309419
EST:     TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAG                         GGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
genomic: TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatc ... attgttgcagGGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
EST: gi|208139954|gb|GD934744.1|GD934744
EST:     TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAG                         GGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
genomic: TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatc ... attgttgcagGGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
EST: gi|207700948|gb|GD682837.1|GD682837
EST:     TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAG                         GGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
genomic: TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatc ... attgttgcagGGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
EST: gi|208112771|gb|GD909304.1|GD909304
EST:     TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAG                         GGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
genomic: TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatc ... attgttgcagGGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
EST: gi|193584273|gb|FK539791.1|FK539791
EST:     CGGCCCTTGCAGGGCCTGTGGAAG                         GGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
genomic: CGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatc ... attgttgcagGGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
EST: gi|208054131|gb|GD854926.1|GD854926
EST:     TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAG                         GGAATTTGCGGTGACATGAGTTTGGCATTTTACC-TGTGGGGTATGATGAC
genomic: TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatc ... attgttgcagGGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
EST: gi|208035481|gb|GD837239.1|GD837239
EST:     TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAG                         GGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
genomic: TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatc ... attgttgcagGGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
EST: gi|208259117|gb|GE052442.1|GE052442
EST:     TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAG                         GGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
genomic: TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatc ... attgttgcagGGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
EST: gi|208165179|gb|GD965057.1|GD965057
EST:     TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAG                         GGAATTTGCGGTGACATGAGTTTGGCATTTT
genomic: TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatc ... attgttgcagGGAATTTGCGGTGACATGAGTTTGGCATTTT
EST: gi|208255590|gb|GE055245.1|GE055245
EST:     TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAG                         GGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
genomic: TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatc ... attgttgcagGGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
EST: gi|254326360|gb|GR840952.1|GR840952
EST:     TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAG                         GGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC
genomic: TTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatc ... attgttgcagGGAATTTGCGGTGACATGAGTTTGGCATTTTACCTTGTGGGGTATGATGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAGAGAGGCTGGCCGGGAGGAAGTGGGAGCCTCAGCATTTTGTCAAGATTGTCAACTGCTCGCCGACTCCGGCGCGGCCCTTGCAGGGCCTGTGGAAGgtgtttcatcactctcaattgttgttttttgtgctcaattgtgttctcagtggtgatttgatacctttcatgtgtgatttgatgattgatgatttgatgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcactctc