1 5' 3' | 2 5' 3' | 3 5' 3' |
ggtacaactcaatttctattgctaattcttttattaaattgtttgataatgaaccagcccttcgaattgcacatttttattgtgttgagctaagctaaatttgttggtccatgcaGAGAAAGACAAAATTCCAGAAGCACTTTGGTTTCTTAGATAGGTCTCTTGCTGGAAAACTAACCTCAGAGGAACAA
species | Glycine max |
transcript | GLYMA17G35230.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGGAGAGTGCATTGAATTTTTCTCAATGTGTATCTGCAACAAGAATAAA GAGAAAGACAAAATTCCAGAAGCACTTTGGTTTCTTAGATAGGTCTCTTGCEST: gi|192326917|gb|FK019209.1|FK019209
genomic: GTGGAGAGTGCATTGAATTTTTCTCAATGTGTATCTGCAACAAGAATAAAggtacaactc ... ggtccatgcaGAGAAAGACAAAATTCCAGAAGCACTTTGGTTTCTTAGATAGGTCTCTTGC
EST: GTGGAGAGTGCATTGAATTTTTCTCAATGTGTATCTGCAACAAGAATAAA GAGAAAGACAAAATTCCAGAAGCACTTTGGTTTCTTAGATAGGTCTCTTGCEST: gi|192294509|gb|FG987438.1|FG987438
genomic: GTGGAGAGTGCATTGAATTTTTCTCAATGTGTATCTGCAACAAGAATAAAggtacaactc ... ggtccatgcaGAGAAAGACAAAATTCCAGAAGCACTTTGGTTTCTTAGATAGGTCTCTTGC
EST: GTGGAGAGTGCATTGAATTTTTCTCAATGTGTATCTGCAACAAGAATAAA GAGAAAGACAAAATTCCAGA-GCACTTTGGTTTCTTAGATAG-TCTCTTGC
genomic: GTGGAGAGTGCATTGAATTTTTCTCAATGTGTATCTGCAACAAGAATAAAggtacaactc ... ggtccatgcaGAGAAAGACAAAATTCCAGAAGCACTTTGGTTTCTTAGATAGGTCTCTTGC
ttcgaattgcacatttttattgtgttgagctaagctaaatttgttggtccatgcaGAGAAAGACAAAATTCCAGAAGCACTTTGGTTTCTTAGATAGGTCTCTTGCTGGAAAACTAACCTCAGAGGAACAA
agctaaa putative branch site (score: 3)
atttttattgtgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtacaactcaatttctattgctaattcttttattaaattgtttgataatgaaccagcccttcgaattgcacatttttattgtgttgagctaagctaaatttgttggtccatgcaGAGAAAGACAAAATTCCAGAAGCACTTTGGTTTCTTAGATAGGTCTCTTGCTGGAAAACTAACCTCAGAGGAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA