1 5' 3' | 2 5' 3' | 3 5' 3' |
...caataaccatgttgccatctttaactgtatgaattttatagccatctgttgagcattggatactgaatcctgatgcaaaatttgttctttacttttgtagCTGCTAACATCATTAGTACGGCGGTGGTAGCAATGGTTTGCATGTTCAAGGCACCATAATGTGTATGCATCTAAACATCAGTTTCCATCGCTAGTCTCCT
species | Glycine max |
transcript | GLYMA17G35070.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTAAGAAGAGCGATGACTATCGCCGCGGCAGTCCCTTTGAACTCTTTGAG CTGCTAACATCATTAGTACGGCGGTGGTAGCAATGGTTTGCATGTTCAAGGEST: gi|213606089|gb|DB982390.1|DB982390
genomic: GTAAGAAGAGCGATGACTATCGCCGCGGCAGTCCCTTTGAACTCTTTGAGgtatataacc ... acttttgtagCTGCTAACATCATTAGTACGGCGGTGGTAGCAATGGTTTGCATGTTCAAGG
EST: GTAAGAAGAGCGATGACTATCGCCGCGGCAGTCCCTTTGAACTCTTTGAG CTGCTAACATCATTAGTACGGCGGTGGTAGCAATGGTTTGCATGTTCAAGG
genomic: GTAAGAAGAGCGATGACTATCGCCGCGGCAGTCCCTTTGAACTCTTTGAGgtatataacc ... acttttgtagCTGCTAACATCATTAGTACGGCGGTGGTAGCAATGGTTTGCATGTTCAAGG
ctgttgagcattggatactgaatcctgatgcaaaatttgttctttacttttgtagCTGCTAACATCATTAGTACGGCGGTGGTAGCAATGGTTTGCATGTTCAAGGCACCATAATGTGTATGCATCTAAACATCAGTTTCCATCGCTAGTCTCCT
tcctgat putative branch site (score: 3)
tttgttctttactttt putative PPT
aaaatttgttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caataaccatgttgccatctttaactgtatgaattttatagccatctgttgagcattggatactgaatcctgatgcaaaatttgttctttacttttgtagCTGCTAACATCATTAGTACGGCGGTGGTAGCAATGGTTTGCATGTTCAAGGCACCATAATGTGTATGCATCTAAACATCAGTTTCCATCGCTAGTCTCCT
- - -accatgt
- - - - - - tgccatc
- - - - - - - - - - - - -tgtatga
- - - - - - - - - - - - - - - - - - - - - - tctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgc