Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataatttgtctctcccttggtttagtaaatacatgccttttttggtatatcagtggatccattgttccattgtctgttttaattttcaaatgtgtttgtgtgttcagTGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG

Basic information

species Glycine max
transcript GLYMA17G34990.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34990.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv04s0008g00650.t01 (Vitis vinifera), 3'ss of exon 8
-------------------------------------------------------gtaataatttgtctctcccttggtttagtaaatacatgccttttttggt---atatcagtg-gatccattgttccattgtctgttttaattttcaaatgtgtttgtgtgttcagTGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
                                                            ||| |    ||   ||| |    |   |   |  || | |   |   || | ||   ||     | ||       ||  || |  |  |||   || || | ||  |||||| || |||||||  |||||| ||||||||||||||||||||
gtaatctctctctctccccccccctctctccctctctccctctctttttctcccccacccaatctaagcctgagttgttcctctttctctctctctctctccatctaatgtgagcctgagttgatatttttggagcttcttgacctgacaagcatgcttttttg--cagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9901090|gb|BE610058.1|BE610058
EST:     GTTATTGGGAAAAGAGGGGCAACAATTNTGTCAATTAAGCAGTCTTGCAA                         TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
genomic: GTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCAGTCTTGCAAgtaataattt ... gtgtgttcagTGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
EST: gi|193611774|gb|FK565389.1|FK565389
EST:     GTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCAGTCTTGCAA                         TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
genomic: GTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCAGTCTTGCAAgtaataattt ... gtgtgttcagTGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
EST: gi|5760980|gb|AI966343.1|AI966343
EST:     GTTATTGNGAAAAGAGGGGCAACAATTTTGTCAATTAAGCAGTCTTGCAA                         TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
genomic: GTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCAGTCTTGCAAgtaataattt ... gtgtgttcagTGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
EST: gi|254339166|gb|GR847883.1|GR847883
EST:     GTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCAGTCTTGCAA                         TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
genomic: GTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCAGTCTTGCAAgtaataattt ... gtgtgttcagTGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggatccattgttccattgtctgttttaattttcaaatgtgtttgtgtgttcagTGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
                        ttttaat  putative branch site (score: 3)
                        ttttaattttcaaatg  TA-rich tract