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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcacttactatttttttgttagatcagaagaattttattttatataagtaatgtaaattttttagggattaatgttaattttctttacttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG

Basic information

species Glycine max
transcript GLYMA17G34900.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19347364|gb|BM892244.1|BM892244
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|11688434|gb|BF596110.1|BF596110
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|254338257|gb|GR849782.1|GR849782
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|120529964|gb|EH258098.1|EH258098
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|26048896|gb|CA785349.1|CA785349
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|298164624|gb|HO014269.1|HO014269
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|22525336|gb|BU084147.1|BU084147
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|10231540|gb|BE800428.1|BE800428
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|15662601|gb|BI699972.1|BI699972
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|120529568|gb|EH257702.1|EH257702
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|120532448|gb|EH260581.1|EH260581
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|9902841|gb|BE611809.1|BE611809
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|10231712|gb|BE800600.1|BE800600
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|10232084|gb|BE800972.1|BE800972
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|9986535|gb|BE660643.1|BE660643
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|15199399|gb|BI423811.1|BI423811
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACGATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|120533615|gb|EH261748.1|EH261748
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataagtaatgtaaattttttagggattaatgttaattttctttacttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
                             tgttaat  putative branch site (score: 3)
                                   ttttctttacttgt  CT-rich tract
     taatgtaaatttttta  TA-rich tract