1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tacgtctcaataaaaaagttatttgtgtgaaattaattaatgaagtatcatttttgcacaagcattttttgaaacttttttgttcttttcctgtttatagGTGTGGGATGTACTAAGCAACAATGAGGTTGCATCAATTGTGTGGAGTGTAGACAGTGAAGAGGCAGCAGCAATGGCAGTAGTGGAAGCAGCCACTGCTG
species | Glycine max |
transcript | GLYMA17G34880.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
tatcatttttgcacaagcattttttgaaacttttttgttcttttcctgtttatagGTGTGGGATGTACTAAGCAACAATGAGGTTGCATCAATTGTGTGGAGTGTAGACAGTGAAGAGGCAGCAGCAATGGCAGTAGTGGAAGCAGCCACTGCTG
cttttttgttcttttc CT-rich tract
attttttgaaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacgtctcaataaaaaagttatttgtgtgaaattaattaatgaagtatcatttttgcacaagcattttttgaaacttttttgttcttttcctgtttatagGTGTGGGATGTACTAAGCAACAATGAGGTTGCATCAATTGTGTGGAGTGTAGACAGTGAAGAGGCAGCAGCAATGGCAGTAGTGGAAGCAGCCACTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - taaaaaa
- - - - - - - - - - - -tgtgtga
- - - - - - - - - - - - - - - - - - - aatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgcacaa