Sequence
atgc intronic sequence ATGC exonic sequence...ctgtaatcatgctaaattgttaatcatgatgactagataccagtgtttgttaattttcttagttcgatccctcttttacccttatttgtttatttctcagCTTGACATTGGTCCAATCCTTGTGCTTTCTGGGGTGACCTCATTAC
Basic information
| species | Glycine max |
| transcript | GLYMA17G34840.1 |
| intron # | 1 |
| splice site | 3' |
| intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7232551|gb|AW567906.1|AW567906EST: GGCTTCCGCGGTTCAGACCATCACAGGGTTTCGGAGCTTTCGCTTCTTGG CTTGACATTGGTCCAATCCTTGTGCTTTCTGGGGTGACCTCATTAC
genomic: GGCTTCCGCGGTTCAGACCATCACAGGGTTTCGGAGCTTTCGCTTCTTGGgtaagacctt ... tatttctcagCTTGACATTGGTCCAATCCTTGTGCTTTCTGGGGTGACCTCATTAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgttaattttcttagttcgatccctcttttacccttatttgtttatttctcagCTTGACATTGGTCCAATCCTTGTGCTTTCTGGGGTGACCTCATTAC
tgttaat putative branch site (score: 3)
tccctcttttaccctt putative PPT
ttatttgtttatttct TA-rich tract
Putative cis-regulatory sequences
| atgc | intron | ATGC | exonic elements by Pertea et al. |
| ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctgtaatcatgctaaattgttaatcatgatgactagataccagtgtttgttaattttcttagttcgatccctcttttacccttatttgtttatttctcagCTTGACATTGGTCCAATCCTTGTGCTTTCTGGGGTGACCTCATTAC
- - - tcatgct
- - - - - - - - - - - - - tgatgac
- - - - - - - - - - - - - - - - - - - -ccagtgt
