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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caggtactaaagttttttcactagggactgattcttaaatgagtgtcacctgtaaggaccaaattattgatttaaataaaggatttcattttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTCTTTTAGTGCCAAACTTGGATTTAGTGTTCTTAAATTGGATGAGTTAGTG

Basic information

species Glycine max
transcript GLYMA17G34750.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307543|gb|FK002047.1|FK002047
EST:     AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAATCTTGCCTGATAG                         GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
genomic: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: gi|19934413|gb|BQ079443.1|BQ079443
EST:     AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG                         GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
genomic: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: gi|9898993|gb|BE607961.1|BE607961
EST:     AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG                         GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
genomic: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: gi|19936734|gb|BQ080993.1|BQ080993
EST:     AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG                         GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
genomic: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: gi|192327694|gb|FK021343.1|FK021343
EST:     AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG                         GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
genomic: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: gi|6747524|gb|AW317980.1|AW317980
EST:     AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG                         GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
genomic: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: gi|192333679|gb|FK026896.1|FK026896
EST:     AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG                         GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
genomic: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: gi|12773515|gb|BG238442.1|BG238442
EST:     GACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG                         GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
genomic: GACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: gi|192331963|gb|FK024507.1|FK024507
EST:     AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG                         GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
genomic: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: gi|9258809|gb|BE346956.1|BE346956
EST:     TGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG                         GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
genomic: TGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacctgtaaggaccaaattattgatttaaataaaggatttcattttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTCTTTTAGTGCCAAACTTGGATTTAGTGTTCTTAAATTGGATGAGTTAGTG
                   tattgat  putative branch site (score: 3)
                                      tttcattttc  putative PPT
               aaattattgatttaaa  TA-rich tract