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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgtgccataaagtctgtcattgctgaataaatttttatcaaattggtgaaggattaactttctcacttgatcttttcattgtacagAGTTGGGATGTCTGGAGTAGTAGTTTGATACAGTGATGCATCTCCACAGATATTTGAGTAAAGCTATATGCCGTGCCCTAGATTTTTACTATGTACTTAA

Basic information

species Glycine max
transcript GLYMA17G34740.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151412340|gb|EV282152.1|EV282152
EST:     TACCTTTGAGATTTAGAAAGTAGTTAGTCATACACCCAATTCTAAATTAG                         AGTTGGGATGTCTGGAGTAGTAGTTTGATACAGTGATGCATCTCCACAGAT
genomic: TACCTTTGAGATTTAGAAAGTAGTTAGTCATACACCCAATTCTAAATTAGgtatttgtgc ... cattgtacagAGTTGGGATGTCTGGAGTAGTAGTTTGATACAGTGATGCATCTCCACAGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttatcaaattggtgaaggattaactttctcacttgatcttttcattgtacagAGTTGGGATGTCTGGAGTAGTAGTTTGATACAGTGATGCATCTCCACAGATATTTGAGTAAAGCTATATGCCGTGCCCTAGATTTTTACTATGTACTTAA
                                       tcttttcatt  CT-rich tract
                     attaacttt  TA-rich tract