1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTCCGGCTCCCAGTTCGACGCCACCACCGCCTTCTCCGGCGGCGGTTTCATGTCTTCTCAGCCGTCTACCCTCAACGATTCCTCTCCCGCGCCGTCAAAAgtatgcaatctttctctctcttctcttttgttttccgtttctccgcaaaagaaacttccagaaaacgaataacatagacacacttaggagaatttatttt...
species | Glycine max |
transcript | GLYMA17G29730.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTCTTCTCAGCCGTCTACCCTCAACGATTCCTCTCCCGCGCCGTCAAAA AGCCGCGAAACTCAGGGTTTGGTGCCAGTGACAGTGAAGCAGATAAGCGAGEST: gi|298199423|gb|HO042786.1|HO042786
genomic: TGTCTTCTCAGCCGTCTACCCTCAACGATTCCTCTCCCGCGCCGTCAAAAgtatgcaatc ... gttgttgaagAGCCGCGAAACTCAGGGTTTGGTGCCAGTGACAGTGAAGCAGATAAGCGAG
EST: TGTCTCCTCAGCCGTCTACCCTCAACGATTCCTCTCCCGCGCCGTCAAAA AGCCGCGAAACTCAGGGTTTGGTGCCAGTGACAGTGTAGCAGATAAGCGAGEST: gi|51345216|gb|CO985949.1|CO985949
genomic: TGTCTTCTCAGCCGTCTACCCTCAACGATTCCTCTCCCGCGCCGTCAAAAgtatgcaatc ... gttgttgaagAGCCGCGAAACTCAGGGTTTGGTGCCAGTGACAGTGAAGCAGATAAGCGAG
EST: TGTCTTCTCAGCCGTCTACCCTCAACGATTCCTCTCCCGCGCCGTCAAAA AGCCGCGAAACTCAGGGTTTGGTGCCAGTGACAGTGAAGCAGATAAGCGAG
genomic: TGTCTTCTCAGCCGTCTACCCTCAACGATTCCTCTCCCGCGCCGTCAAAAgtatgcaatc ... gttgttgaagAGCCGCGAAACTCAGGGTTTGGTGCCAGTGACAGTGAAGCAGATAAGCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCGGCTCCCAGTTCGACGCCACCACCGCCTTCTCCGGCGGCGGTTTCATGTCTTCTCAGCCGTCTACCCTCAACGATTCCTCTCCCGCGCCGTCAAAAgtatgcaatctttctctctcttctcttttgttttccgtttctccgcaaaagaaacttccagaaaacgaataacatagacacacttaggagaatttatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaacga