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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaatgctacatgatgttagcaaacaacaatatggatgttattctttgggctgtggaagtctttaatcttcataaagctaattggtgtttaattttgtagAGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAG

Basic information

species Glycine max
transcript GLYMA17G12750.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12750.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0016g04730.t01 (Vitis vinifera), 3'ss of exon 3
taaatgctacatgatgttagcaaacaacaatatggatgttattctttgggctgtggaagtctttaatcttcataaagctaattggtgtttaattttgtagAGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAG
 |     |   |  ||||            |    |  |  |  | |    || |   ||  ||  |  |       | |  | || ||| ||||| |||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||| |||
gatgcctttacttttgttgttcttttttctttcctaaatcttgttgtaacttgggcttgttcttttttctttggtctcaagattgtttttcattttatagATGATGAATTGATATCTCCATGCATGTGCAAAGGCACCCAACAGTTTGTTCATCGTTCATGCCTTGATCATTGGCGTTCAGTGAAG

upper sequence: GLYMA17G12750.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ26224 (Selaginella moellendorffii), 3'ss of exon 1
taaatgctacatgatgttagcaaacaacaatatggatgttattctttgggctgtggaagtctttaatcttcataaagctaattggtgttta-attttgtagAGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAG
               || ||        |  || ||| || |  |  | |||  | |||     |||  |  |   | |  ||    || |    ||  ||  ||||||||||| ||||| || |||||||| ||||| |||||||| |||||||| ||||| || ||||| |||||||| || |||
---------------gtaagtctttgctagaatcgatctt-tcttccgtgctaagtaaga---aaattcttctttggttttttacccttgatgcgttccagGCGATGAATTGATCTCTCCTTGTATGTGCAAGGGGACTCAACAGTTCGTCCATCGATCATGCCTCGATCACTGGCGCTCGGTCAAG

upper sequence: GLYMA17G12750.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ14522 (Selaginella moellendorffii), 3'ss of exon 1
taaatgctacatgatgttagcaaacaacaatatggatgttattctttgggctgtggaagtctttaatcttcataaagctaattggtgtttaattttgtagAGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAG
               || ||        |  || ||| || |  |  | |||  | |||     | ||||| |     |  |     |      ||  ||  ||||||||||| ||||| || |||||||| ||||| |||||||| |||||||| ||||| || ||||| |||||||| || |||
---------------gtaagtctttgctagaatcgatctt-tcttccgtgctaagtaagaa--aattcttctttggttttttccccttggtgcgttccagGCGATGAATTGATCTCTCCTTGTATGTGCAAGGGGACTCAACAGTTCGTCCATCGATCATGCCTCGATCACTGGCGCTCGGTCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409807|gb|EV279615.1|EV279615
EST:     TGGATTACTCCCCTGTTGTCGAATTTGCCTCGAAAGCGATTCCGACCCAG                         AGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCC
genomic: TGGATTACTCCCCTGTTGTCGAATTTGCCTCGAAAGCGATTCCGACCCAGgtgaaaactc ... aattttgtagAGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgggctgtggaagtctttaatcttcataaagctaattggtgtttaattttgtagAGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAG
                tttaatcttcataaa  TA-rich tract