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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATACATCATGGACAAAGATGGTTCCTTCAGGAACTCGTTTGATGATGGTTGGGATAGGATACTGTCAAGGCATCCTATTCCATTTTATTATTGCATTGgtaagcttttatggttatggaagttatttgcttttagccaatggccaaatttctcctgtatatttgtctgggaccagatcgtccaagatacatgtaatct...

Basic information

species Glycine max
transcript GLYMA17G12750.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12750.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0016g04730.t01 (Vitis vinifera), 5'ss of exon 6
GCATACATCATGGACAAAGATGGTTCCTTCAGGAACTCGTTTGATGATGGTTGGGATAGGATACTGTCAAGGCATCCTATTCCATTTTATTATTGCATTGgtaagcttttatggttatggaagttatttgctt-ttagccaatggccaaatttctcctgtatatttgtctgggaccagatcgtccaagatacatgtaatct-
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GCATACATCATGGACAAAGATGGGGCTTTCAGGAATTCGTTCAGTGATGGTTGGGATCGAATATTGTCCAGGCATCCTATACCATTCTACTACTGTATAGgtaaactttcagaaacatttttcttgactatctattagtttctggctccgtgttgattggttttataatttgt-catgcttccataaattacatctg-tcta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409807|gb|EV279615.1|EV279615
EST:     TTGGGATAGGATACTGTCAAGGCATCCTATTCCATTTTATTATTGCATTG                         GAGTGCTGGCCTTCTTTGTATTGATTGGGNNNNNNNGGCCTCATACTGCAT
genomic: TTGGGATAGGATACTGTCAAGGCATCCTATTCCATTTTATTATTGCATTGgtaagctttt ... tgtatgtcagGAGTGCTGGCCTTCTTTGTATTGATTGGGTTTTTT-GGCCTCATACTGCAT
EST: gi|58025010|gb|CX711751.1|CX711751
EST:     TTGGGATAGGATACTGTCAAGGCATCCTATTCCATTTTATTATTGCATTG                         GAGTGCTGGCCTTCTTTGTATTGATTGGGTTTTTTGGCCTCATACTGCATT
genomic: TTGGGATAGGATACTGTCAAGGCATCCTATTCCATTTTATTATTGCATTGgtaagctttt ... tgtatgtcagGAGTGCTGGCCTTCTTTGTATTGATTGGGTTTTTTGGCCTCATACTGCATT