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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCGACCCCAAAGCAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGgtaaaatgttacatttttcatttttctgttcaactgtgcatgtgacagacacaggcatctttgttgttgtagttgtactattatcatggccaccatgacg...

Basic information

species Glycine max
transcript GLYMA17G12720.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12720.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g08160.1 (Oryza sativa), 5'ss of exon 3
TGGCGACCCCAAAGCAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGgtaaaatgttacatttttcatttttctgttcaactgtg-catgtgacagacacaggcatctttgttgttgtagttgtactattatcatg-gccaccatgacg-----------------------------------------------------------------
|||||||||| ||||||||  | ||| ||||||||||||| || |||||||||||||| || ||||||||| | ||||||   |  |     | ||||  | |  |||| |  |  || || ||   |  |   |  |    ||||  | |||  |  | |  |   | ||  ||||                                                                   
TGGCGACCCCGAAGCAGATTCGCGAGCTGATGAAGGTTGATGGATTGACCAATGATGAGGTGAAAAGCCATCTCCAGgtagggtaattatcatctcatcatgcaattcatccatctcacgt-acgttcttaattaaat--actgtttaaattgatcattgactacaagacagtatgattaactgattgctagacatgaatgccataatgagcattttgatctgaatttttttttgtttgggcag

upper sequence: GLYMA17G12720.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G348238_T01 (Zea mays), 5'ss of exon 3
TGGCGACCCCAAAGCAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGgtaaaatgttacatttttcatttttctgttcaactgtgcatgtgacagacacaggcatctttgttgttgtagttgtactatt-atcat-ggccaccatgacg--
|||||||||| ||||||||  | ||| |||||||||| || || |||||||||||||| || ||||||||| | |||||||| | | ||  | | | |         || |  ||||   ||   |     | ||  | |    |    | |  | ||| ||||| || ||  ||||    
TGGCGACCCCGAAGCAGATCCGCGAGCTGATGAAGGTGGATGGATTGACCAATGATGAGGTGAAAAGCCATCTCCAGgtaaattataac--tctccgtgcacggcaccaccgatgcacacgatgcagcatagtatagtagca--tactatcgagcaattcatcattggtcattatgaattt

upper sequence: GLYMA17G12720.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G03500.1 (Arabidopsis thaliana), 5'ss of exon 3
TGGCGACCCCAAAGCAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGgtaaaatg--ttacatttttc---atttttctgttcaactgtgcatgtgacagacacaggcatctttgttgttgtagttgtactattatcatggccaccatgacg
|||| || || || || ||||||||  | ||||| ||||| |||||||||||||||||||| ||||||||| | |||||||  |   | |||  |  |   | | | || | ||||| |   |    || |   | | | ||||  || |||  |  |  ||     |  |           
TGGCTACACCTAAACAAATAAGGGAACTCATGAAAGTTGATGGTTTGACCAATGATGAAGTCAAAAGCCATCTCCAGgtaacttaaatcacaagtcaccacaatatgctttacaactttttttaactcatatttaagta-ctttactggtgtgttgattttaaacaaacag-----------

upper sequence: GLYMA17G12720.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0016g04600.t01 (Vitis vinifera), 5'ss of exon 3
TGGCGACCCCAAAGCAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGgtaaaatgttacatttttcatttttctgttcaactgtgcatgtgacagacacaggcatctttgttgttgtagttgtactattatcatggccaccatgacg---
|||| ||||||||||| || || ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |  | | ||    | || | ||   || |   | |||    || |  ||  | ||| |   |   || |  ||    | | |   | |   |   
TGGCCACCCCAAAGCAAATCAGAGAGCTGATGAAAGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGgtaaaatctctc-tcttcttctcttgtctttttctatttctttgatcctcatat-caaatgtgtagacatgcgtgaaacatggcaacgtct-tcgtactgggt