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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaacacacaaccttgttaaaagtggcaattatgtcttttcatcaatttaaattggctatgatctggtgcagCTGAGCATGATTGTGAACGAGTCACTACGACTGTACCCTCCGACGATCGCGACAATCAGAAGGGCCAAAGCGGACGTTGATTTGGGGGGATACAAGATAC

Basic information

species Glycine max
transcript GLYMA17G12700.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20812644|gb|BQ297122.1|BQ297122
EST:     GCGGATCACGTGACCTTCCCACCAAAGACCATGTTGCAAAGCTAAGGACG                         CTGAGCATGATTGTGAACGAGTCACTACGACTGTACCCTCCGACGATCGCG
genomic: GCGGATCACGTGACCTTCCCACCAAAGACCATGTTGCAAAGCTAAGGACGgtaagcaaca ... tctggtgcagCTGAGCATGATTGTGAACGAGTCACTACGACTGTACCCTCCGACGATCGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaagtggcaattatgtcttttcatcaatttaaattggctatgatctggtgcagCTGAGCATGATTGTGAACGAGTCACTACGACTGTACCCTCCGACGATCGCGACAATCAGAAGGGCCAAAGCGGACGTTGATTTGGGGGGATACAAGATAC
          aattatgtcttttcat  TA-rich tract