1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tagtcaactaaataccaaactttaattagatacaaatagcatgcatgttgatatcccatgtctcacaaaatttaatgtttttttttttcatgtgttccagGTTTCACTGACCTACAAAGGATAGCAATTGGGCTTGTATTTTCCATTTTTGGAATGGCGGCTGCTTCTGTATGCGAGAGGAAACGGTTATCCGTTGCAAA
species | Glycine max |
transcript | GLYMA17G12420.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTATGACCGACTCATCATGCCCCTTTGGAAAAAGTGGAACGGCAAACCAG GTTTCACTGACCTACAAAGGATAGCAATTGGGCTTGTATTTTCCATTTTTGEST: gi|57574130|gb|CX547105.1|CX547105
genomic: CTATGACCGACTCATCATGCCCCTTTGGAAAAAGTGGAACGGCAAACCAGgtagatatat ... tgtgttccagGTTTCACTGACCTACAAAGGATAGCAATTGGGCTTGTATTTTCCATTTTTG
EST: TATGACCGACTCATCATGCCCCTTT-GAAAAAGTGGAAC-GCAAANCCA- GTTTCACTGACTTACAAAGGATAGCAATTGGGCTTGTATTTTCCATTTTTEST: gi|7690834|gb|AW758971.1|AW758971
genomic: TATGACCGACTCATCATGCCCCTTTGGAAAAAGTGGAACGGCAAA-CCAGgtagatatat ... tgtgttccagGTTTCACTGACCTACAAAGGATAGCAATTGGGCTTGTATTTTCCATTTTT
EST: CTATGACCGACTCATCATGCCCCTTTGGAAAAAGTGGAACGGCAAACCAG GTTTCACTGACCTACAAAGGATAGCAATTGGGCTTGTATTTTCCATTTTTGEST: gi|57574241|gb|CX547216.1|CX547216
genomic: CTATGACCGACTCATCATGCCCCTTTGGAAAAAGTGGAACGGCAAACCAGgtagatatat ... tgtgttccagGTTTCACTGACCTACAAAGGATAGCAATTGGGCTTGTATTTTCCATTTTTG
EST: TATGACCGACTCATCATGCCCCTTTGGAAAAAGTGGAAC-GCAAAACCAG GTTTCACTGACCTACAAAGGATAGCAATTGGGCTTGTATTTTCCATTTTTEST: gi|9820787|gb|BE556297.1|BE556297
genomic: TATGACCGACTCATCATGCCCCTTTGGAAAAAGTGGAACGGC-AAACCAGgtagatatat ... tgtgttccagGTTTCACTGACCTACAAAGGATAGCAATTGGGCTTGTATTTTCCATTTTT
EST: CTATGACCGACTCATCATGCCCCTTTGGAAAAAGTGGAACGGCAAACCAG GTTTCACTGACCTACAAAGGATAGCAATTGGGCTTGTATTTTCCATTTTTG
genomic: CTATGACCGACTCATCATGCCCCTTTGGAAAAAGTGGAACGGCAAACCAGgtagatatat ... tgtgttccagGTTTCACTGACCTACAAAGGATAGCAATTGGGCTTGTATTTTCCATTTTTG
tgttgatatcccatgtctcacaaaatttaatgtttttttttttcatgtgttccagGTTTCACTGACCTACAAAGGATAGCAATTGGGCTTGTATTTTCCATTTTTGGAATGGCGGCTGCTTCTGTATGCGAGAGGAAACGGTTATCCGTTGCAAA
tttttttttttcatgt CT-rich tract
aaaatttaatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtcaactaaataccaaactttaattagatacaaatagcatgcatgttgatatcccatgtctcacaaaatttaatgtttttttttttcatgtgttccagGTTTCACTGACCTACAAAGGATAGCAATTGGGCTTGTATTTTCCATTTTTGGAATGGCGGCTGCTTCTGTATGCGAGAGGAAACGGTTATCCGTTGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - ccaaact
- - - - - - - - - - - - - - gatacaaa
- - - - - - - - - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtct