Sequence
atgc intronic sequence ATGC exonic sequence...atgaaaccttaaaggacaaggaaatgaattactttattttacattgcaacttctgtttgtctttcaatgctgattagttcaattttacttgattttccagTTGGTTGGTAGGCTGGACAACAGTGCAATTTCTGCCACAGGTGCAAAGTTGGCATTTAAGTCGAATGAAGAGATAGCTTTTAAAGTACGGACCGTTCCTC
Basic information
species | Glycine max |
transcript | GLYMA17G12390.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G12390.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv11s0016g05250.t01 (Vitis vinifera), 3'ss of exon 1
------atgaaaccttaaaggacaaggaaatgaattactttattttacattgcaacttctgtttgtctttcaatgctgattagttcaattttacttgattttccagTTGGTTGGTAGGCTGGACAACAGTGCAATTTCTGCCACAGGTGCAAAGTTGGCATTTAAGTCGAATGAAGAGATAGCTTTTAAAGTACGGACCGTTCCTC
|| || ||| | || ||||| ||| | ||| || | |||| ||| || || ||| | || || ||| ||| | ||||||||||| |||| ||||| ||||| |||| ||||| ||||||||| |||| || ||||| ||||||||||||| || ||||| || || | ||||
gggcctgtggttttcataaaaacactgtaac-aattaagccttttga---tgctacccttcattgt-tttatgtgttgctta-tgcatcctttcttattttactagTTGGTTGGTCGGCTTGACAATAGTGCTGTTTCAGCCACTGGTGCAAAGATGGCCTTCAAGTCCAATGAAGAGATAGAACTTCAAGTAAGGTCCATCCCTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51343643|gb|CO984376.1|CO984376EST: NNNNCGAGGCCGCTGCGTCGGATCGCGTTGGCAACATCACCGTTCACAAG TTGGTTGGTAGGCTGGACAACAGTGCAATTTCTGCCACAGGTGCAAAGTTG
genomic: TCTTCGAGGCCGCTGCGTCGGATCGCGTTGGCAACATCACCGTTCACAAGgtcacttttc ... gattttccagTTGGTTGGTAGGCTGGACAACAGTGCAATTTCTGCCACAGGTGCAAAGTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcaacttctgtttgtctttcaatgctgattagttcaattttacttgattttccagTTGGTTGGTAGGCTGGACAACAGTGCAATTTCTGCCACAGGTGCAAAGTTGGCATTTAAGTCGAATGAAGAGATAGCTTTTAAAGTACGGACCGTTCCTC
ttttcc CT-rich tract
aattttacttgatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgaaaccttaaaggacaaggaaatgaattactttattttacattgcaacttctgtttgtctttcaatgctgattagttcaattttacttgattttccagTTGGTTGGTAGGCTGGACAACAGTGCAATTTCTGCCACAGGTGCAAAGTTGGCATTTAAGTCGAATGAAGAGATAGCTTTTAAAGTACGGACCGTTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
-tgaaacc
- - - - - - - - - - gaaatgaa
- - - - - - - - - - - - - - - - - - - - -cattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat