Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATTGGGAATTCTGGTGGCCAAACTTCCCTATCTTGGTTTACTTCAAGGAGACACAAACAAAGCCTGAGGGACAAATTCATTGCTTTCCCATAATATTTgtaagtagtttggacacaagtatagccaatacacatatagaagatagctaagaaaataattttcttccttacttgagttgcagacatcaagcttcaacatttttttattgtttcttgctaatttattttgacaaacag

Basic information

species Glycine max
transcript GLYMA17G12380.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12380.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os05g33290.1 (Oryza sativa), 5'ss of exon 8
TAATTGGGAATTCTGGTGGCCAAACTTCCCTATCTTGGTTTACTTCAAGGAGACACAAACAAAGCCTGAGGGACAAATTCATTGCTTTCCCATAATATTTgtaagtagtttggacacaagtatagccaatacacatatagaagatagctaagaaaataattttcttccttacttgagttgcagacatcaagcttcaacatttttttattgtttcttgctaatttattttgacaaacag
 ||||||||| | ||||||||| | || |||||||||||||| ||||||||||| |||||||| || || || |||||||||| ||| ||  | || |||||||||        ||| | | |  | ||      | | | |      || | || |   |||  |  |  | ||  ||||| |||                                                    
GAATTGGGAACTGTGGTGGCCACAATTTCCTATCTTGGTTTATTTCAAGGAGACCCAAACAAAACCCGAAGGGCAAATTCATTTCTTCCCTGTGATTTTTgtaagtc-------cactaattttactaactttgttgttgtatca---tatggaatttgatttggtgttggcgtg--ttgca-acacag-------------------------------------------------

upper sequence: GLYMA17G12380.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G088138_T05 (Zea mays), 5'ss of exon 6
TAATTGGGAATTCTGGTGGCCAAACTTCCCTATCTTGGTTTACTTCAAGGAGACACAAACAAAGCCTGAGGGACAAATTCATTGCTTTCCCATAATATTTgtaagtagtttggacacaagtatagccaatacacatataga-agatagctaagaaaataattttcttccttacttgagttgcagacatcaagcttcaacatttttttattgtttcttgctaatttattttgacaaacag
 || |||||  | ||||||||| | || ||| |||||||||||||||||||||| ||||| ||||| || ||||| || || | ||| ||  | ||||| ||||||   |          | || | | |  |  | | |  |   | | |     ||                                                                                 
AAACTGGGAGCTGTGGTGGCCACAGTTTCCTGTCTTGGTTTACTTCAAGGAGACCCAAACGAAGCCCGAAGGACAGATCCACTTCTTCCCTGTGATATTCgtaagttcgtcaattgttgatttaccaagttaatttttcggtactcaaccagtgctatggcacag--------------------------------------------------------------------------

upper sequence: GLYMA17G12380.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv11s0016g05260.t01 (Vitis vinifera), 5'ss of exon 7
TAATTGGGAATTCTGGTGGCCAAACTTCCCTATCTTGGTTTACTTCAAGGAGACACAAACAAAGCCTGAGGGACAAATTCATTGCTTTCCCATAATATTTgtaagtagtttggacacaagtatagccaatacacatatagaagatagctaagaaaataattttcttccttacttgagttgcagacatcaagcttcaacatttttttattgtttcttgctaatttattttgacaaacag
 || |||||| |||||||||| ||||||||||| ||||| || || |||||||||||||| | |||||| |||||| | || | ||||||  |||| ||||| ||||   | || | | | | |  ||| |   || ||  | ||   |||   |    | |    | |     |||||  | | || | |   |  |  ||  | | |                             
GAACTGGGAACTCTGGTGGCCCAACTTCCCTATTTTGGTGTATTTTAAGGAGACACAAACTAGGCCTGAAGGACAAGTGCACTTCTTTCCAGTAATTTTTgtgagta---ttgagagatgcaaaagcaaca---atttactatatttgtaacctagctgtatgtagcatc-taggagttaaaaaaattatgtccctgc--ttgataact-----------------------------

upper sequence: GLYMA17G12380.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ33300 (Selaginella moellendorffii), 5'ss of exon 7
TAATTGGGAATTCTGGTGGCCAAACTTCCCTATCTTGGTTTACTTCAAGGAGACACAAACAAAGCCTGAGGGACAAATTCATTGCTTTCCCATAATATTTgtaagtagtttggacacaagtatagccaatacacatatagaagatagctaagaaaataattttcttccttacttgagttgcagacatcaagcttcaacatttttttattgtttcttgctaatttattttgacaaacag
 || |||||  | |||||||||| ||| || ||| | || |||||||||||||||||||| ||||| ||||| ||| |||| |  |||||  | || |||||||||| ||         || |   |  |     | |    ||||        ||| ||||  || ||| ||    ||| ||                                                       
AAACTGGGAGCTATGGTGGCCAAGCTTTCCAATCCTCGTCTACTTCAAGGAGACACAAACCAAGCCGGAGGGCCAAGTTCACTTTTTTCCAGTGATCTTTgtaagtacttct-------gttttttcgtt---tgtgtgtgtgata--------aatcatttctttactttctgttcttgtag-------------------------------------------------------