Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGCTTCTGGAATCTCGTCATAGTTCTTTCAGTTGCCATATACCCTCTCTCTTTACCTCTCAGACACTACAAGgttcgtctttttcccatgttttaatttttaattttatttctagcattttgtgccccaagtatccattttctttctttcattattttcgattcttagataa...

Basic information

species Glycine max
transcript GLYMA17G12290.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19934906|gb|BQ079936.1|BQ079936
EST:     CTTTACCTCTCAGACACTACAAGAAG                       
genomic: CTTTACCTCTCAGACACTAC---AAGgttcgtcttt ... aactcaga
EST: gi|298191145|gb|HO038624.1|HO038624
EST:     TTCTTTCAGTTGCCATATACCCTCTCTCTTTACCTCTCAGACACTACAAGAAG                       
genomic: TTCTTTCAGTTGCCATATACCCTCTCTCTTTACCTCTCAGACACTAC---AAGgttcgtcttt ... aactcaga
EST: gi|17020758|gb|BM091792.1|BM091792
EST:     TTCTTTCAGTTGCCATATACCCTCTCTCTTTACCTCTCAGACACTACAAGAAG                       
genomic: TTCTTTCAGTTGCCATATACCCTCTCTCTTTACCTCTCAGACACTAC---AAGgttcgtcttt ... aactcaga
EST: gi|14125779|gb|BG790217.1|BG790217
EST:     TACCCTCTCTCTTTACCTCTCAGACACTACAAGAAG                       
genomic: TACCCTCTCTCTTTACCTCTCAGACACTAC---AAGgttcgtcttt ... aactcaga
EST: gi|9820852|gb|BE556362.1|BE556362
EST:     TACCCTCTCTCTTTACCTCTCAGACACTACAAG                         CCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGATAG
genomic: TACCCTCTCTCTTTACCTCTCAGACACTACAAGgttcgtcttt ... aactcagaagCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGATAG
EST: gi|7640110|gb|AW734418.1|AW734418
EST:     TTCTTTCAGTTGCCATATACCCTCTCTCTTTACCTCTCAGACACTACAAGAAG                       
genomic: TTCTTTCAGTTGCCATATACCCTCTCTCTTTACCTCTCAGACACTAC---AAGgttcgtcttt ... aactcaga