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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGATGGATTCGCCAAAAGTATACCTCAATGGACTAAAAACTTCAGTGACTCTGATTCTCATAATTTCTCTCACGTTATTTCCTTCTAATTCAGgtaaaaacatacccatcatgattgtccaaatatttctatgtcaacatgatggaataattctaaggttaatttagttacccttggggtatcatttcattacttggtgtgattaacttaactttatgttcttgacttaacttgttgaacag

Basic information

species Glycine max
transcript GLYMA17G12260.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|46492756|gb|CN472312.1|CN472312
EST:     AGTGACTCTGATTCTCATAATTTCTCTCACGTTATTTCCTTCTAATTCAG                         TAGGGTCAGCTTCAGCGAAAGATGGTGGCAAGGTTCTGAAGCAAAAGAAAT
genomic: AGTGACTCTGATTCTCATAATTTCTCTCACGTTATTTCCTTCTAATTCAGgtaaaaacat ... tgttgaacagTAGGGTCAGCTTCAGCGAAAGATGGTGGCAAGGTTCTGAAGCAAAAGAAAT
EST: gi|6915751|gb|AW397281.1|AW397281
EST:     AGTGACTCTGATTCTCATAATTTCTCTCACGTTATTTCCTTCTAATTCAG                         TAGGGTCAGCTTCAGCGAAAGATGGTGGCAAGGTTCTGAAGCAAAAGAAAT
genomic: AGTGACTCTGATTCTCATAATTTCTCTCACGTTATTTCCTTCTAATTCAGgtaaaaacat ... tgttgaacagTAGGGTCAGCTTCAGCGAAAGATGGTGGCAAGGTTCTGAAGCAAAAGAAAT
EST: gi|9983444|gb|BE657552.1|BE657552
EST:     AGTGACTCTGATTCTCATAATTTCTCTCACGTTATTTCCTTCTAATTCAG                         TAGGGTCAGCTTCAGCGAAAGATGGTGGCAAGGTTCTGAAGCAAAAGAAAT
genomic: AGTGACTCTGATTCTCATAATTTCTCTCACGTTATTTCCTTCTAATTCAGgtaaaaacat ... tgttgaacagTAGGGTCAGCTTCAGCGAAAGATGGTGGCAAGGTTCTGAAGCAAAAGAAAT
EST: gi|61241592|gb|DN590985.1|DN590985
EST:     AGTGACTCTGATTCTCATAATTTCTCTCACGTTATTTCCTTCTAATTCAG                         TAGGGTCAGCTTCAGCGAAAGATGGTGGCAAGGTTCTGAAGCAAAAGAAAT
genomic: AGTGACTCTGATTCTCATAATTTCTCTCACGTTATTTCCTTCTAATTCAGgtaaaaacat ... tgttgaacagTAGGGTCAGCTTCAGCGAAAGATGGTGGCAAGGTTCTGAAGCAAAAGAAAT