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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACGGGAACGATAGCACAGACTTGTATTACCGGACGATGATTGAAGCCAATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAGgtacgtgaaaattgaagctggtttgtttcaaattgagttattacttttagattaaagcgtgtggatggatgaggacgtagttgcttctttgatggcag

Basic information

species Glycine max
transcript GLYMA17G12240.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12240.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv11s0016g05430.t01 (Vitis vinifera), 5'ss of exon 1
TAACGGGAACGATAGCACAGACTTGTATTACCGGACGATGATTGAAGCCAATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAGgtacgtgaaaattgaagctggt--ttgtttcaaattgagtt--attacttttagattaaagcg-tgtg-gatggatgaggacgta--gttgcttctttgatggcag---------------------------------------------------------------------------------------
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TAACGGGAATGGTAATATGGAATCTTATTATCGGACGATGATTGAGGCTAATCCTGGGAACGCCCTTCTTCTTGGCAATTACGCAAGGTTCTTAAAAGAGgtatctacatatttttcctgttaattcatgcatgtcctgtttggttgccgagaaagcaatgaaatatctaatgtttggaaattttttgttgcattttttctttaagcataactagctttcgaattttccaagctctgcttgcaaaacaattcccatatatgctaatttgtttgtttatttggagtgggctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298188677|gb|HO035370.1|HO035370
EST:     ATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAG                         GTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCGAT
genomic: ATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAGgtacgtgaaa ... ttgatggcagGTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCGAT
EST: gi|23731319|gb|BU763778.1|BU763778
EST:     ATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAG                         GTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCGATATTG
genomic: ATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAGgtacgtgaaa ... ttgatggcagGTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCGATATTG
EST: gi|19453333|gb|BM954743.1|BM954743
EST:     ATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAG                         GTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCGATATTG
genomic: ATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAGgtacgtgaaa ... ttgatggcagGTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCGATATTG
EST: gi|298197402|gb|HO044881.1|HO044881
EST:     ATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAG                         GTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCT
genomic: ATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAGgtacgtgaaa ... ttgatggcagGTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCT
EST: gi|213589748|gb|DB973279.1|DB973279
EST:     ATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAG                         GTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCG
genomic: ATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAGgtacgtgaaa ... ttgatggcagGTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCG
EST: gi|298171260|gb|HO016292.1|HO016292
EST:     ATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAG                         GTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCGATATTG
genomic: ATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAGgtacgtgaaa ... ttgatggcagGTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCGATATTG
EST: gi|208122724|gb|GD922730.1|GD922730
EST:     ATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAG                         GTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCGATATTG
genomic: ATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAGgtacgtgaaa ... ttgatggcagGTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCGATATTG
EST: gi|24136859|gb|BU927369.1|BU927369
EST:     ATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAG                         GTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCGATATTG
genomic: ATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAGgtacgtgaaa ... ttgatggcagGTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCGATATTG
EST: gi|213590420|gb|DB971890.1|DB971890
EST:     ATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAG                         GTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCGATATTG
genomic: ATCCAGGGAACCCTCTGTTTCTTGGCAACTACGCGAGGTACTTGAAAGAGgtacgtgaaa ... ttgatggcagGTTCGAGGGGACTATGTGAAAGCGGAGGAGTACTGTTCTAGAGCGATATTG