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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaatatctctctctacatacacaataaccttactaacttcttttctttctttttctaaacaagtgtaatctgtcttcttagtccgatcttagggattcttattcacgtagactctagtgaatactaacttttttctttgttcttgaaaaccattcatttaaatacttgtttgtttgtttgttttgcagTGTTCAACTTCGCAACAGGATTTCACAACGTAGTCACCCTGTCAAAGAAACACTACGACAGTTGCAACGTGAGTGAAGTAATGCAATCATTCGACACAGC

Basic information

species Glycine max
transcript GLYMA17G12170.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343723|gb|CO984456.1|CO984456
EST:     ATATACCTCCTTTGCAGCTAATAACACTTTCAGACTAAACGACATACTCG                         TGTTCAACTTCGCAACAGGATTTCACAACGTAGTCACCCTGTCAAAGAAAC
genomic: ATATACCTCCTTTGCAGCTAATAACACTTTCAGACTAAACGACATACTCGgtcaatatct ... tgttttgcagTGTTCAACTTCGCAACAGGATTTCACAACGTAGTCACCCTGTCAAAGAAAC
EST: gi|13790730|gb|BG653321.1|BG653321
EST:     ATATACCTCCTTTGCAGCTAATAACACTTTCAGACTAAACGACATACTCG                         TGTTCAACTTCGCAACAGGATTTCACAACGTAGTCACCCTGTCAAAGAAAC
genomic: ATATACCTCCTTTGCAGCTAATAACACTTTCAGACTAAACGACATACTCGgtcaatatct ... tgttttgcagTGTTCAACTTCGCAACAGGATTTCACAACGTAGTCACCCTGTCAAAGAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttgttcttgaaaaccattcatttaaatacttgtttgtttgtttgttttgcagTGTTCAACTTCGCAACAGGATTTCACAACGTAGTCACCCTGTCAAAGAAACACTACGACAGTTGCAACGTGAGTGAAGTAATGCAATCATTCGACACAGC
                                           tttgtttt  CT-rich tract
                  attcatttaaatactt  TA-rich tract