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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcatcatcatctacacttattaactaaatcaagtcccacgtggtacaaattaaagtaaagactcgaaccatcattggtgtgttttgcagTTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCAACTACGATTCTTGCAGCTCAGCCTCTCCTATCGCCACTTTCACCACTCC

Basic information

species Glycine max
transcript GLYMA17G12150.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13562507|gb|BG550727.1|BG550727
EST:     TTACCCAGCTTGGGCCTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAG                         TTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
genomic: TTACCCAGCTTGGGCCTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAGgtaagtcatc ... tgttttgcagTTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
EST: gi|23055912|gb|BU577694.1|BU577694
EST:     TTACCCAGCTTGGGCCTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAG                         TTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
genomic: TTACCCAGCTTGGGCCTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAGgtaagtcatc ... tgttttgcagTTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
EST: gi|13481999|gb|BG511342.1|BG511342
EST:     TTACCCAGCTTGGGCCTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAT                         TTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
genomic: TTACCCAGCTTGGGCCTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAGgtaagtcatc ... tgttttgcagTTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
EST: gi|23052958|gb|BU577449.1|BU577449
EST:     TTACCCAGCTTGGGCCTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAG                         TTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
genomic: TTACCCAGCTTGGGCCTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAGgtaagtcatc ... tgttttgcagTTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
EST: gi|209700724|gb|BW673055.1|BW673055
EST:     TTACACAGCTTGGGCCTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAG                         TTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
genomic: TTACCCAGCTTGGGCCTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAGgtaagtcatc ... tgttttgcagTTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
EST: gi|23051768|gb|BU577105.1|BU577105
EST:     CTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAG                         TTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
genomic: CTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAGgtaagtcatc ... tgttttgcagTTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
EST: gi|23064122|gb|BU578895.1|BU578895
EST:     TTACCCAGCTTGGGCCTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAG                         TTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
genomic: TTACCCAGCTTGGGCCTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAGgtaagtcatc ... tgttttgcagTTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
EST: gi|6072589|gb|AW101976.1|AW101976
EST:     TTACCCAGCTTGGGCCTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAG                         TTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
genomic: TTACCCAGCTTGGGCCTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAGgtaagtcatc ... tgttttgcagTTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
EST: gi|17020925|gb|BM091959.1|BM091959
EST:     TTACCCAGCTTGGGCCTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAG                         TTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
genomic: TTACCCAGCTTGGGCCTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAGgtaagtcatc ... tgttttgcagTTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
EST: gi|10235434|gb|BE804322.1|BE804322
EST:     TTACCCAGCTTGGGCCTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAG                         TTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA
genomic: TTACCCAGCTTGGGCCTCTGCCAAAAACTTCAAGGTTGGAGACATCCTAGgtaagtcatc ... tgttttgcagTTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccacgtggtacaaattaaagtaaagactcgaaccatcattggtgtgttttgcagTTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCAACTACGATTCTTGCAGCTCAGCCTCTCCTATCGCCACTTTCACCACTCC
         tacaaattaaagtaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtcatcatcatctacacttattaactaaatcaagtcccacgtggtacaaattaaagtaaagactcgaaccatcattggtgtgttttgcagTTTTCAACTACCCATCAAATGCACACAACGTAGAGGAGGTGACAAAGGCCAACTACGATTCTTGCAGCTCAGCCTCTCCTATCGCCACTTTCACCACTCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA