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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttccattttttcatcttctgtggatccactcttaagagtctgtctcaaaatcctatttttatgtgtcattgtgtggagattagtagctttgagctgccagtgatgtgtttttgtttctttggttttctgggtccattcatttttgtgttgatcacagCTGCACTTAACTTGGGATGCAAAGCCGTGAGAACTTCCAGAAGTGATCGGCACAATAACCCAAGGACTTACCTTTCTCCAAGGATTCAACAGCCTCCTTG

Basic information

species Glycine max
transcript GLYMA17G12140.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17153727|gb|BM143660.1|BM143660
EST:     ATGAGACAACCGAGACAGGAGGCCTCTTGCCCCCATGTGTTGAAG                         CTGCACTTAACTTGGGATGCAAAGCCGTGAGAACTTCCAGAAGTGATCGGC
genomic: ATGAGACAACCGAGACAGGAGGCCTCTTGCCCCCATGTGTTGAAGgtacttccat ... ttgatcacagCTGCACTTAACTTGGGATGCAAAGCCGTGAGAACTTCCAGAAGTGATCGGC
EST: gi|10237540|gb|BE806428.1|BE806428
EST:     GAGAGATGAGACAACCGAGACAGGAGGCCTCTTGCCCCCATGTGTTGAAG                         CTGCACTTAACTTGGGATGCAAAGCCGTGAGAACTTCCAGAAGTGATCGGC
genomic: GAGAGATGAGACAACCGAGACAGGAGGCCTCTTGCCCCCATGTGTTGAAGgtacttccat ... ttgatcacagCTGCACTTAACTTGGGATGCAAAGCCGTGAGAACTTCCAGAAGTGATCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtgtttttgtttctttggttttctgggtccattcatttttgtgttgatcacagCTGCACTTAACTTGGGATGCAAAGCCGTGAGAACTTCCAGAAGTGATCGGCACAATAACCCAAGGACTTACCTTTCTCCAAGGATTCAACAGCCTCCTTG
                                           tgttgat  putative branch site (score: 4)
                                attcattttt  TA-rich tract