Sequence
atgc intronic sequence ATGC exonic sequence...gtttcatgcttacttgtttgttttcaatacttgccaccttccctgttatataggatttccttttctacaatcaattttttttttctgcttgtgttgtcagTTTTCTACAATGGGAAGGAAAAAGACAGAGGATGCTGGCCCATCTGCGAAGGTAAAGGCTGGTAGCAAAGATCCTCCTAAGAAGGAAAAAATTTCTGTGT
Basic information
species | Glycine max |
transcript | GLYMA17G12130.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151394330|gb|EV264201.1|EV264201EST: AACTCATACATCGACTCGACTGCGAGTGTGCCCAACTTCTGCGAAATCAG TTTTCTACAATGGGAAGGAAAAAGACAGAGGATGCTGGCCCATCTGCGAAG
genomic: AACTCATACATCGACTCGACTGCGAGTGTGCCCAACTTCTGCGAAATCAGgttccgcact ... gtgttgtcagTTTTCTACAATGGGAAGGAAAAAGACAGAGGATGCTGGCCCATCTGCGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatataggatttccttttctacaatcaattttttttttctgcttgtgttgtcagTTTTCTACAATGGGAAGGAAAAAGACAGAGGATGCTGGCCCATCTGCGAAGGTAAAGGCTGGTAGCAAAGATCCTCCTAAGAAGGAAAAAATTTCTGTGT
ttttttttttctgctt CT-rich tract
ttttctacaatcaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttcatgcttacttgtttgttttcaatacttgccaccttccctgttatataggatttccttttctacaatcaattttttttttctgcttgtgttgtcagTTTTCTACAATGGGAAGGAAAAAGACAGAGGATGCTGGCCCATCTGCGAAGGTAAAGGCTGGTAGCAAAGATCCTCCTAAGAAGGAAAAAATTTCTGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- -tcatgct
- - - - - - - tgtttgt
- - - - - - - - - - - - - - - ttgccac
- - - - - - - - - - - - - - - - - - -cttccct