Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcattttgctccttatattaatttcatttacatttctgttgctttgaatgaatgtgacttaattatctttgttgatatggattttgttatttcaatctctttagGCGATCGTTTGGTTCCATCTTCATGACTATGTGAAGACATTGTCAGTTTTGGAACCTCTCTTTCAAAATATTGAACCCATAGATGAG

Basic information

species Glycine max
transcript GLYMA17G11950.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G11950.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0016g05820.t01 (Vitis vinifera), 3'ss of exon 3
gtatgttcattttgctccttatattaatttcatt----taca-----tttctgttgctttgaatgaatgtgacttaat--------tatctttgttgatatggattttgttatttcaatctctttagGCGATCGTTTGGTTCCATCTTCATGACTATGTGAAGACATTGTCAGTTTTGGAACCTCTCTTTCAAAATATTGAACCCATAGATGAG
||||||||| || | |  || | | | |||| ||    | ||     |||  ||||  ||   |     | | || ||        | | |   |||| |   |   |   | || |   | |  |||| || || ||||||||||||||||| ||||  ||| || |||||||||||||| | || | |||||||||||||||||||||||||
gtatgttcacttggatttttgtgt-agtttctttgaagtgcaagaattttaagttgaattttctagggatcatttcatgtatgggctgtttggattgacactaaaaatcaaacttgatcatatacagGCAATTGTCTGGTTCCATCTTCATGAATATGGAAAGGCACTGTCAGTTTTGGAATCACTATATCAAAATATTGAACCCATAGATGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatgtgacttaattatctttgttgatatggattttgttatttcaatctctttagGCGATCGTTTGGTTCCATCTTCATGACTATGTGAAGACATTGTCAGTTTTGGAACCTCTCTTTCAAAATATTGAACCCATAGATGAG
                    tgttgat  putative branch site (score: 4)
                                              tctcttt  putative PPT
                               attttgttatttcaat  TA-rich tract