1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttcacaagaaaaacattcctgcttgattggttgtgcactaaagtttgcaattcctgaatgagctgtaatgaattgaatctcctcttggaatctctgcagGAATGATCCCTTTTGCATTTCTTGAAGATATTCATAAAAAATTTGTGAAGACGTATGGCCGTGCTATTCTTTCAGCTCCTGCTTATGCCATGAATGATGA
species | Glycine max |
transcript | GLYMA17G11930.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ttgcaattcctgaatgagctgtaatgaattgaatctcctcttggaatctctgcagGAATGATCCCTTTTGCATTTCTTGAAGATATTCATAAAAAATTTGTGAAGACGTATGGCCGTGCTATTCTTTCAGCTCCTGCTTATGCCATGAATGATGA
tctctgc CT-rich tract
taatgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcacaagaaaaacattcctgcttgattggttgtgcactaaagtttgcaattcctgaatgagctgtaatgaattgaatctcctcttggaatctctgcagGAATGATCCCTTTTGCATTTCTTGAAGATATTCATAAAAAATTTGTGAAGACGTATGGCCGTGCTATTCTTTCAGCTCCTGCTTATGCCATGAATGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - aagaaaa
- - - - - - - cattcct
- - - - - - - - - - - - - - -ggttgtg
- - - - - - - - - - - - - - - - - - - - - - tttgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgag