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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTCATACTCATTGGACCCATCATTGGAAGCTGCTTTACTCTTTGTGATTAAATTCCAGAAATCTCAACCTGATTTGGTTGCTAGAGCCCATCTTCAGgtggatcttcaaacattccttgctttgactgtcttgttatagctactttaatgaatcttctgcattctacatagactagcaatttaattaaattgagtat...

Basic information

species Glycine max
transcript GLYMA17G11890.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G11890.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G11000.2 (Arabidopsis thaliana), 5'ss of exon 8
ATGTTCATACTCATTGGACCCATCATTGGAAGCTGCTTTACTCTTTGTGATTAAATTCCAGAAATCTCAACCTGATTTGGTTGCTAGAGCCCATCTTCAGgtggatc-ttcaaacattccttgctttgactgtcttgttatagctactttaatgaatcttctgcattctacatagactagcaatttaattaaattgagtat
 ||| |||  |||||||| |||   || || || |  ||    ||||||||| | || || |||||||  ||||||||||||||||| || ||||||||||||  |   |  ||| |  |        |   |   | | |      |   ||     ||   |||| |   |            ||| ||  |||  |  
CTGTGCATTTTCATTGGAACCAGATTTAGAGGCCGTCTTGGAGTTTGTGATTCAGTTTCAAAAATCTCGTCCTGATTTGGTTGCTAGGGCTCATCTTCAGgtgcgttactttaacttaacgcatcaatatcatgcagctctgtgctttcagatacccatttatcattttgttttcttgttttgagtaactattttggctg-

upper sequence: GLYMA17G11890.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv11s0016g05910.t01 (Vitis vinifera), 5'ss of exon 2
ATGTTCATACTCATTGGACCCATCATTGGAAGCTGCTTTACTCTTTGTGATTAAATTCCAGAAATCTCAACCTGATTTGGTTGCTAGAGCCCATCTTCAGgtggatcttcaaacattccttgctttgactgtcttgttatagctactttaatgaatcttctgca---ttctacatagactagcaattta-attaaattgagtat
 ||||| || || |||||||| || || ||||||| ||| | ||||||| |  ||||||||||  |||| |||||||||||||| ||||| ||||| ||||| | | || |    | | |    |  | |  | | || ||  |   ||| ||| | ||    |   | || | |    |   |||||  |||  |||      
TTGTTCCTATTCTTTGGACCCCTCGTTAGAAGCTGTTTTGCGCTTTGTGGTGCAATTCCAGAAGCCTCAGCCTGATTTGGTTGCAAGAGCTCATCTCCAGgttggtttttattagtccttcatctctagtcacat-ttctatttctcttagtgattattgataaagttcctgctttattttataatttttatttgattagc---