1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttttttatttaaaaacaaattcatatacttttgtggccagagaaatggtgctagtgggtgttctgacaaattattttctataacaccatatttaaacagGAGTCATGAAGAGATGTTGAAGAGATTCAAGGTGTGGGTGTATGAGGAGGGAGAGCAACCATTAGTGCATGATGGGCCAGCAAATGATATATACTCCATT
species | Glycine max |
transcript | GLYMA17G11870.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
atggtgctagtgggtgttctgacaaattattttctataacaccatatttaaacagGAGTCATGAAGAGATGTTGAAGAGATTCAAGGTGTGGGTGTATGAGGAGGGAGAGCAACCATTAGTGCATGATGGGCCAGCAAATGATATATACTCCATT
aaattattttctataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttttatttaaaaacaaattcatatacttttgtggccagagaaatggtgctagtgggtgttctgacaaattattttctataacaccatatttaaacagGAGTCATGAAGAGATGTTGAAGAGATTCAAGGTGTGGGTGTATGAGGAGGGAGAGCAACCATTAGTGCATGATGGGCCAGCAAATGATATATACTCCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - -aaacaaa
- - - - - - - - - - - catatac
- - - - - - - - - - - - - - - -ttgtggc
- - - - - - - - - - - - - - - - - - - - - - - tggtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaccat