Sequence
atgc intronic sequence ATGC exonic sequence...tagttattttaaaggaaatttttaagtatggttatgattagcaattttgtgttagtaaatcaaaaccacaagtaacacgtgctttacttgatgaaaacagGCTCCAAAAGTTTCCAATGGCAATCCTGAACTTTTTCAAAGTTTCATTAGGGCACTTTGCAATGCTAACACTTCAGAAGGGTTTCATCCAAATAGAGATG
Basic information
species | Glycine max |
transcript | GLYMA17G11860.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G11860.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G33290.1 (Arabidopsis thaliana), 3'ss of exon 3
---tagttattttaaaggaaatttttaagtatggttatgattagcaattttgtgttagtaaatcaaaaccacaagtaacacgtgctttacttg-atgaaaacagGCTCCAAAAGTTTCCAATGGCAATCCTGAACTTTTTCAAAGTTTCATTAGGGCACTTTGCAATGCTAACACTTCAGAAGGGTTTCATCCAAATAGAGATG
| || | |||| | | | ||| | |||| || | | || | | | || || | | | | ||| || | |||| ||| | || |||| ||||| | | ||| ||| |||||||||| |||||||||||||||||| || ||||| || | || || || |
gcttgattctattaatttgattaatattatatcaagaaaattatca--tctaaattcctgattttt--ttttaatgaatatgatttacatttgtgtgtgtatagGCACCAGACGTGATTGATGGGAATCCAAAGTTGTTTGAAAAATTCATTAGGGGACTTTGCAATGCTAACACCTCGGAAGGTTTCCGACCTAACGTGGACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgtgttagtaaatcaaaaccacaagtaacacgtgctttacttgatgaaaacagGCTCCAAAAGTTTCCAATGGCAATCCTGAACTTTTTCAAAGTTTCATTAGGGCACTTTGCAATGCTAACACTTCAGAAGGGTTTCATCCAAATAGAGATG
ttagtaaatcaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagttattttaaaggaaatttttaagtatggttatgattagcaattttgtgttagtaaatcaaaaccacaagtaacacgtgctttacttgatgaaaacagGCTCCAAAAGTTTCCAATGGCAATCCTGAACTTTTTCAAAGTTTCATTAGGGCACTTTGCAATGCTAACACTTCAGAAGGGTTTCATCCAAATAGAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - aaaggaaa
- - - - - - - - - - - - - - -ggttatg
- - - - - - - - - - - - - - - - - - - - - - ttttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaacc