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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGCTTTCACACTTTCTAGTAGAATCAAAGCCAATCATGTTCTTCCCTCGACCTCTGCAAATGACAGCTACAGCAATGAAGTTGATGAAGTGATTAAGgtactcatcacccaaccttaataatgttttggaaggctgttctcattgttctcggattcattaattaattgattccttttgtctttaatttatcag

Basic information

species Glycine max
transcript GLYMA17G11850.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19453264|gb|BM954674.1|BM954674
EST:     CGACCTCTGCAAATGACAGCTACAGCAATGAAGTTGATGAAGTGATTAAG                         TTTGGCCATGTCATGAAGAATGTGACTAGTTTGAAGAGGATTGAAGAAGGT
genomic: CGACCTCTGCAAATGACAGCTACAGCAATGAAGTTGATGAAGTGATTAAGgtactcatca ... aatttatcagTTTGGCCATGTCATGAAGAATGTGACTAGTTTGAAGAGGATTGAAGAAGGT
EST: gi|51344329|gb|CO985062.1|CO985062
EST:     CGACCTCTGCAAATGACAGCTACAGCAATGAAGTTGATGAAGTGATTAAG                         TTTGGCCATGTCATGAAGAATGTGACTAGTTTGAAGAGGATTGAAGAAGGT
genomic: CGACCTCTGCAAATGACAGCTACAGCAATGAAGTTGATGAAGTGATTAAGgtactcatca ... aatttatcagTTTGGCCATGTCATGAAGAATGTGACTAGTTTGAAGAGGATTGAAGAAGGT