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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaattgaattgaattggttagtggaagaaattggcaatatctatcgactcgtttgcgtgtgccatcaagaaggaattaacttcgcaattcagtgcttatgagatgagcatttttaaattaatctctcaactcttgctgtggatagGGATTGGTGTTTGTTCTTGTTCGTGTTAATGAGAGATGGCATGAATTACCGTATATTACTGGACTCTGCAAAAAGTTGTATATTGGCTTCTTCTGTTCCC

Basic information

species Glycine max
transcript GLYMA17G01960.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298195618|gb|HO044009.1|HO044009
EST:     TTGCAGTGCAG                         GGATTGGTGTTTGTTCTTGTTCGTGTTAATGAGAGATGGCATGAATTACCG
genomic: TTGCAGTGCAGgtaagcaatt ... ctgtggatagGGATTGGTGTTTGTTCTTGTTCGTGTTAATGAGAGATGGCATGAATTACCG
EST: gi|213596020|gb|DB966295.1|DB966295
EST:     TTGCAGTGCAG                         GGATTGGTGTTTGTTCTTGTTCGTGTTAATGAGAGATGGCATGAATTACCG
genomic: TTGCAGTGCAGgtaagcaatt ... ctgtggatagGGATTGGTGTTTGTTCTTGTTCGTGTTAATGAGAGATGGCATGAATTACCG
EST: gi|151411926|gb|EV281737.1|EV281737
EST:     TTGTATCTCGCTTCAATCAAACTATGTGTTTTTGAAACATTGCAGTGCAG                         GGATTGGTGTTTGTTCTTGTTCGTGTTAATGAGAGATGGCATGAATTACCG
genomic: TTGTATCTCGCTTCAATCAAACTATGTGTTTTTGAAACATTGCAGTGCAGgtaagcaatt ... ctgtggatagGGATTGGTGTTTGTTCTTGTTCGTGTTAATGAGAGATGGCATGAATTACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgcttatgagatgagcatttttaaattaatctctcaactcttgctgtggatagGGATTGGTGTTTGTTCTTGTTCGTGTTAATGAGAGATGGCATGAATTACCGTATATTACTGGACTCTGCAAAAAGTTGTATATTGGCTTCTTCTGTTCCC
                         aattaat  putative branch site (score: 3)
                                       ctcttgct  putative PPT
                  atttttaaattaatct  TA-rich tract