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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGGGTTTATGACGAGgtaaccactatttcatagtgagtttctagacagtgtaatgtagattttagcccatcgatcagttacaagtttaactatttatgttttacag

Basic information

species Glycine max
transcript GLYMA17G01940.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01940.2 (Glycine max), 5'ss of exon 5
lower sequence: PP1S303_66V6.1 (Physcomitrella patens), 5'ss of exon 5
GTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGGGTTTATGACGAGgta--accactatttcatagtgagtttcta-gacagt-gtaatgtagattttagcccatc--gatcagtta-caagtttaactatttatgtt-ttacag--
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GAACGACAAGGAGAGACGTTTGATGCAGATAACCCTGAGCATATGAAATGGATCTATGATCAGgtgtgattatctttttgcttgggattgcaacgatggtcgtaacg-atgttatggtgaatttgaataagataacacgcacgccttgttatattgctgtaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254338438|gb|GR849856.1|GR849856
EST:     TGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGGGTTTATGACGAG                         GCTGTCAAGAGGGCTGAGCTTTTTGGCATTCCTGGAGTTACTTATTCTCTT
genomic: TGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGGGTTTATGACGAGgtaaccacta ... tgttttacagGCTGTCAAGAGGGCTGAGCTTTTTGGCATTCCTGGAGTTACTTATTCTCTT