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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGATAATGCAAGACCAAGGAAATAGAGTGTTTGTAGGTAAAGACGAGAATGCAGTGCGACAGCTTATAAGCATGATAAGTAGTGACAACTGCCACGTGgtatgttttatgggtttagacaatcacaatttttttgttctgcttctatttggtgggtgtgattgtccttaatattttacag

Basic information

species Glycine max
transcript GLYMA17G01850.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01850.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G61850.2 (Arabidopsis thaliana), 5'ss of exon 5
AAAGATAATGCAAGACCAAGGAAATAGAGTGTTTGTAGGTAAAGACGAGAATGCAGTGCGACAGCTTATAAGCATGATAAGTAGTGACAACTGCCACGTGgtatgtt--ttatgggtttagacaatcacaatttttttgttctgcttctatttggtgggtgtgattgtcctta-atattttacag
 ||||||||||||||  |||||||| |     || | |||||||| || ||||| ||| | ||||||||||| ||||||| |||||||||    |||||||||||||  || | | | |   | ||             || | |||   |||||      | |   |   || |  ||| | ||
GAAGATAATGCAAGATGAAGGAAATCGTTCTGTTATTGGTAAAGATGAAAATGCGGTGAGGCAGCTTATAAGTATGATAACTAGTGACAATCAACACGTGgtatgttggtttttgttctgtgctatggtttgaaaaaacttttactttcttttgggaacaatcaccataactacaggtttgatag

upper sequence: GLYMA17G01850.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0116g00830.t01 (Vitis vinifera), 5'ss of exon 5
AAAGATAATGCAAGACCAAGGAAATAGAGTGTTTGTAGGTAAAGACGAGAATGCAGTGCGACAGCTTATAAGCATGATAAGTAGTGACAACTGCCACGTGgtatgttttatgggtttagacaatcacaatt---tttttg-----ttctgcttctatttggtg----ggtgtgattgtccttaatattttacag
|||||||||||||||  |||||||  | |   |||| |||||||| ||||||||| |||| ||||| |||||||||||||||||||||||  | || |||||||||        |||  ||  | |  | |   || | |     || | ||||  |  ||        | | ||||| ||  |  |||  |||
AAAGATAATGCAAGATGAAGGAAACCGTGCAGTTGTTGGTAAAGATGAGAATGCAATGCGGCAGCTCATAAGCATGATAAGTAGTGACAATCGTCATGTGgtatgtcagtaaatttttaacttttatgaataagttctcggttgcttattcttccctcaggcattctattctaattgttct-gacttttggcag