1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagctgtctaatcaaaggttgattatgttaatatgtttcacactgacatgtgagctccagaatgtgtttttccaccttagaaaaatgcattgcaatatgcgtagacattttttaaaaatgtttttcctcccttttttcttcagTTGTGTCGTTTATGGCTGCACTAGGCTTCTTGATATACGGAGGAAG
species | Glycine max |
transcript | GLYMA17G01820.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATAGATGACAACAATGTTGTGCAGTTCATTGGAGAGATATTTATTGCAG TTGTGTCGTTTATGGCTGCACTAGGCTTCTTGATATACGGAGGAAGEST: gi|58014541|gb|CX701283.1|CX701283
genomic: GATAGATGACAACAATGTTGTGCAGTTCATTGGAGAGATATTTATTGCAGgttagctgtc ... ttttcttcagTTGTGTCGTTTATGGCTGCACTAGGCTTCTTGATATACGGAGGAAG
EST: GATAGATGACAACAATGTTGTGCAGTTCATTGGAGAGATATTTATTGCAG TTGTGTCGTTTATGGCTGCACTAGGCTTCTTGATATACGGAGGAAGEST: gi|17518941|gb|BM187983.1|BM187983
genomic: GATAGATGACAACAATGTTGTGCAGTTCATTGGAGAGATATTTATTGCAGgttagctgtc ... ttttcttcagTTGTGTCGTTTATGGCTGCACTAGGCTTCTTGATATACGGAGGAAG
EST: ATAGATGACAACAATGTTGTGCAGTTCATTAGGAGAGATATTTATTGCAG TTGTGTCGTTTATGGCTGCACTAGGCTTCTTGATATACGGAGGAAGEST: gi|14999917|gb|BI320731.1|BI320731
genomic: ATAGATGACAACAATGTTGTGCAGTTCATT-GGAGAGATATTTATTGCAGgttagctgtc ... ttttcttcagTTGTGTCGTTTATGGCTGCACTAGGCTTCTTGATATACGGAGGAAG
EST: GTGCAGTTCATTGGAGAGATATTTATTGCAG TTGTGTCGTTTATGGCTGCACTAGGCTTCTTGATATACGGAGGAAG
genomic: GTGCAGTTCATTGGAGAGATATTTATTGCAGgttagctgtc ... ttttcttcagTTGTGTCGTTTATGGCTGCACTAGGCTTCTTGATATACGGAGGAAG
attgcaatatgcgtagacattttttaaaaatgtttttcctcccttttttcttcagTTGTGTCGTTTATGGCTGCACTAGGCTTCTTGATATACGGAGGAAG
tgtttttcctcccttt CT-rich tract
tagacattttttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagctgtctaatcaaaggttgattatgttaatatgtttcacactgacatgtgagctccagaatgtgtttttccaccttagaaaaatgcattgcaatatgcgtagacattttttaaaaatgtttttcctcccttttttcttcagTTGTGTCGTTTATGGCTGCACTAGGCTTCTTGATATACGGAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA