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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACACTTGGATTGACTCTGTCTATGCATCGTAAGAAACCTCGGGTGTATATTGGGTGCATGAAATCTGGTCCTGTCCTTGCTCAAAAgtaagaaaacctgtattttatttttgttagtttaaatccacttcctagtgtaactgtcttaccacag

Basic information

species Glycine max
transcript GLYMA17G01660.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01660.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv10s0116g01710.t01 (Vitis vinifera), 5'ss of exon 8
CAACACTTGGATTGACTCTGTCTATGCATCGTAAGAAACCTCGGGTGTATATTGGGTGCATGAAATCTGGTCCTGTCCTTGCTCAAAAgtaagaaaacc--tgtatttt------attt-----ttg-----ttagtttaaatccacttcctagtgtaactgtcttaccacag
 |||||||| | ||||| || ||    ||||   | |||||||||||||||| || |||||||| || ||||||||||||||||| ||||||||| |       |||||      || |     |||     | | ||  | |   ||||  | | | | | |  |   ||||
GAACACTTGCAATGACTTTGGCTCAATATCGGTTGCAACCTCGGGTGTATATAGGCTGCATGAAGTCGGGTCCTGTCCTTGCTCAGAAgtaagaagattgtcagatttttcaatcatctaagggttgaggaatcaattatatttggcttctaaatattaatttaatgaaacag