1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atatagcattgggtaagttaggccccatcaagttatgattctgtgcattggtgaattctcacttggttctgtttctgattcttttgttgtgatgctgtagGTACCTTGTCCCAGCGGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCGTAAAAGGATTAAGGTCAGTGCGGAGAAGGCTATTTTTGTTTTTATCTAC
species | Glycine max |
transcript | GLYMA17G01650.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAGAA GTACCTTGTCCCAGCGGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCGEST: gi|14991910|gb|BI317583.1|BI317583
genomic: ATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAGAAgttagtgatt ... gatgctgtagGTACCTTGTCCCAGCGGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCG
EST: ATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAGAA GTACCTTGTCCCAGCGGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCGEST: gi|298173214|gb|HO020198.1|HO020198
genomic: ATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAGAAgttagtgatt ... gatgctgtagGTACCTTGTCCCAGCGGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCG
EST: ATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAGAA GTACCTTGTCCCAGCGGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCGEST: gi|207752825|gb|GD724663.1|GD724663
genomic: ATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAGAAgttagtgatt ... gatgctgtagGTACCTTGTCCCAGCGGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCG
EST: ATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAGAA GTACCTTGTCCCAGCGGATTTGEST: gi|16276100|gb|BI941679.1|BI941679
genomic: ATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAGAAgttagtgatt ... gatgctgtagGTACCTTGTCCCAGCGGATTTG
EST: ATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAGAA GTACCTTGTCCCAGCGGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCGEST: gi|151395677|gb|EV265554.1|EV265554
genomic: ATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAGAAgttagtgatt ... gatgctgtagGTACCTTGTCCCAGCGGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCG
EST: ATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAGAA GTACCTTGTCCCAGCGGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCGEST: gi|207715674|gb|GD697474.1|GD697474
genomic: ATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAGAAgttagtgatt ... gatgctgtagGTACCTTGTCCCAGCGGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCG
EST: TGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATACGAATAAGAAGAA GTACCTTGTCCCAGCGGATTTGEST: gi|192300085|gb|FG991875.1|FG991875
genomic: TGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACAT-CGA-TAAGAAGAAgttagtgatt ... gatgctgtagGTACCTTGTCCCAGCGGATTTG
EST: ATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAGAA GCACCTTGTCCCAGCGGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCGEST: gi|16280358|gb|BI943920.1|BI943920
genomic: ATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAGAAgttagtgatt ... gatgctgtagGTACCTTGTCCCAGCGGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCG
EST: TTGTTGAGAAAGCGGAAAGAAGTGACAT-CCANGACATCGATAAGAAGAA GTACCTTGTCCAAGCGGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCG
genomic: TTGTTGAGAAAGCGGAAAGAAGTGACATCCCA-GACATCGATAAGAAGAAgttagtgatt ... gatgctgtagGTACCTTGTCCCAGCGGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCG
cattggtgaattctcacttggttctgtttctgattcttttgttgtgatgctgtagGTACCTTGTCCCAGCGGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCGTAAAAGGATTAAGGTCAGTGCGGAGAAGGCTATTTTTGTTTTTATCTAC
attctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatagcattgggtaagttaggccccatcaagttatgattctgtgcattggtgaattctcacttggttctgtttctgattcttttgttgtgatgctgtagGTACCTTGTCCCAGCGGATTTGACTGTTGGTCAGTTTGTTTATGTTGTCCGTAAAAGGATTAAGGTCAGTGCGGAGAAGGCTATTTTTGTTTTTATCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - ccccatc
- - - - - - - - - - - - - - - - - - - -tctgtgc
- - - - - - - - - - - - - - - - - - - - - - - attggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttctg