1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgatttgcttctaaattatatttccttctgcctctttatgatgtcagcttcaaaataagtaacaggattatatggtgacgtgttttatccttgacggaacagATAAAGAAGATGATAGTTTATGCCGTTGATCAAGCTGTCAAAGACTTAAAAGATTTACTGAAGTGTTCTTGATTGGCTTGCAGAAAGCTCATTTTGCCGT
species | Glycine max |
transcript | GLYMA17G01410.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGTTCCGCCAGCTTCCCAAGAACCACAAGGCTAGAGAAGATAAGCTGGAG ATAAAGAAGATGATAGTTTATGCCEST: gi|17963790|gb|BM270535.1|BM270535
genomic: AGTTCCGCCAGCTTCCCAAGAACCACAAGGCTAGAGAAGATAAGCTGGAGgtgatttgct ... gacggaacagATAAAGAAGATGATAGTTTATGCC
EST: AGTTCCGCCAGCTTCCCAAGAACCACAAGGCTAGAGAAGATAAGCTGGAG ATAAAGAAGATGATAGTTTATGCCGTTGATCAAGCTGTCAAAGACTTAAAAEST: gi|5126356|gb|AI748092.1|AI748092
genomic: AGTTCCGCCAGCTTCCCAAGAACCACAAGGCTAGAGAAGATAAGCTGGAGgtgatttgct ... gacggaacagATAAAGAAGATGATAGTTTATGCCGTTGATCAAGCTGTCAAAGACTTAAAA
EST: AGTTCCGCCAGCTTACCAAGAACCACAAGGCTAGAGAAGATAAGCTGGAG ATAAAGAAGATGAT
genomic: AGTTCCGCCAGCTTCCCAAGAACCACAAGGCTAGAGAAGATAAGCTGGAGgtgatttgct ... gacggaacagATAAAGAAGATGAT
cttcaaaataagtaacaggattatatggtgacgtgttttatccttgacggaacagATAAAGAAGATGATAGTTTATGCCGTTGATCAAGCTGTCAAAGACTTAAAAGATTTACTGAAGTGTTCTTGATTGGCTTGCAGAAAGCTCATTTTGCCGT
aaataagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatttgcttctaaattatatttccttctgcctctttatgatgtcagcttcaaaataagtaacaggattatatggtgacgtgttttatccttgacggaacagATAAAGAAGATGATAGTTTATGCCGTTGATCAAGCTGTCAAAGACTTAAAAGATTTACTGAAGTGTTCTTGATTGGCTTGCAGAAAGCTCATTTTGCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA