1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagtgtcttaattttgacccaaataggttttttcctcttcccttgagtcccattcctcgctgcatatttagtcatttggatcactgcagAAGAAAGAACTGGAAGAGAAGACATTACTTGGAAGGCTTGGTACAACAGAAGACATGGGTGCTGCAGCAGCTTTTTTGGCATCTGACGATGCTGCTTATA
species | Glycine max |
transcript | GLYMA17G01300.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTTTGTGCCAACCAATTTTGCTTCATTCATTACAAGTAACGATGCTGTG AAGAAAGAACTGGAAGAGAAGACATTACTTGGAAGGCTTGGTACAACAGAAEST: gi|21600371|gb|BQ610702.1|BQ610702
genomic: GTTTTGTGCCAACCAATTTTGCTTCATTCATTACAAGTAACGATGCTGTGgtgagtgtct ... atcactgcagAAGAAAGAACTGGAAGAGAAGACATTACTTGGAAGGCTTGGTACAACAGAA
EST: GTTTTGTGCCAACCAATTTTGCTTCATTCATTACAAGTAACGATGCTGTG AAGAAAGAACTGGAAGAGAAGACATTACTTGGAAGGCTTGGTACAACAGAAEST: gi|207726915|gb|GD701999.1|GD701999
genomic: GTTTTGTGCCAACCAATTTTGCTTCATTCATTACAAGTAACGATGCTGTGgtgagtgtct ... atcactgcagAAGAAAGAACTGGAAGAGAAGACATTACTTGGAAGGCTTGGTACAACAGAA
EST: AACGATGCTGTTG AAGAAAGAACTGGAAGAGAAGACATTACTTGGAAGGCTTGGTACAACAGAEST: gi|6072960|gb|AW102347.1|AW102347
genomic: AACGATGCTG-TGgtgagtgtct ... atcactgcagAAGAAAGAACTGGAAGAGAAGACATTACTTGGAAGGCTTGGTACAACAGA
EST: GTTTTGTGCCAACCAATTTTGCTTCATTCATTACAAGTAACGATGCTGTG AAGAAAGAACTGGAAGAGAAGACATTACTTGGAAGGCTTGGTACAACAGAAEST: gi|209708640|gb|BW678817.1|BW678817
genomic: GTTTTGTGCCAACCAATTTTGCTTCATTCATTACAAGTAACGATGCTGTGgtgagtgtct ... atcactgcagAAGAAAGAACTGGAAGAGAAGACATTACTTGGAAGGCTTGGTACAACAGAA
EST: GTTTTGTGCCAACCAATTTTGCTTCATTCATTACAAGTAACGATGCTGTG AAGAAAGAACTGGAAGAGAAGACATTACTTGGAAGGCTTGGTACAACAGAAEST: gi|192320109|gb|FK014179.1|FK014179
genomic: GTTTTGTGCCAACCAATTTTGCTTCATTCATTACAAGTAACGATGCTGTGgtgagtgtct ... atcactgcagAAGAAAGAACTGGAAGAGAAGACATTACTTGGAAGGCTTGGTACAACAGAA
EST: GTAACGATGCTGTG AAGAAAGAACTGGAAGAGAAGACATTACTTGGAAGGCTTGGTACAACAGAAEST: gi|192334496|gb|FK025589.1|FK025589
genomic: GTAACGATGCTGTGgtgagtgtct ... atcactgcagAAGAAAGAACTGGAAGAGAAGACATTACTTGGAAGGCTTGGTACAACAGAA
EST: GTTTTGTGCCAACCAATTTTGCTTCATTCATTACAAGTAACGATGCTGTG AAGAAAGAACTGGAAGAGAAGACATTACTTGGAAGGCTTGGTACAACAGAA
genomic: GTTTTGTGCCAACCAATTTTGCTTCATTCATTACAAGTAACGATGCTGTGgtgagtgtct ... atcactgcagAAGAAAGAACTGGAAGAGAAGACATTACTTGGAAGGCTTGGTACAACAGAA
ctcttcccttgagtcccattcctcgctgcatatttagtcatttggatcactgcagAAGAAAGAACTGGAAGAGAAGACATTACTTGGAAGGCTTGGTACAACAGAAGACATGGGTGCTGCAGCAGCTTTTTTGGCATCTGACGATGCTGCTTATA
atatttagtcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgtcttaattttgacccaaataggttttttcctcttcccttgagtcccattcctcgctgcatatttagtcatttggatcactgcagAAGAAAGAACTGGAAGAGAAGACATTACTTGGAAGGCTTGGTACAACAGAAGACATGGGTGCTGCAGCAGCTTTTTTGGCATCTGACGATGCTGCTTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT