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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTACTGTACCCTAAAACTTTAGGTGGAGGTGCAGTCTTTAGTGGTTGGGTTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAGgtactaatcttcagtagtagtatgtgtgcgaccttaatatttttgtctcggggttccttttttgtcaagcttagctattttccgtccattttcttcaaga...

Basic information

species Glycine max
transcript GLYMA17G01270.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307222|gb|FK001222.1|FK001222
EST:     TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAG                         ACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACGGTAATGTTTGAG
genomic: TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAGgtactaatct ... aaatatccagACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACGGTAATGTTTGAG
EST: gi|192318393|gb|FK006513.1|FK006513
EST:     TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAG                         ACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACGGTAATGTTTGAG
genomic: TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAGgtactaatct ... aaatatccagACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACGGTAATGTTTGAG
EST: gi|192294939|gb|FG986658.1|FG986658
EST:     TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAG                         ACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACGGTAATGTTTGAG
genomic: TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAGgtactaatct ... aaatatccagACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACGGTAATGTTTGAG
EST: gi|208254564|gb|GE053504.1|GE053504
EST:     TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAG                         ACACCCATACTATGGTCCCATGGGCTGGTTGATAGAA
genomic: TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAGgtactaatct ... aaatatccagACACCCATACTATGGTCCCATGGGCTGGTTGATAGAA
EST: gi|298181505|gb|HO022944.1|HO022944
EST:     TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAG                         ACACCCATACTATGGTCCCATGGGCTGGTTGAT
genomic: TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAGgtactaatct ... aaatatccagACACCCATACTATGGTCCCATGGGCTGGTTGAT
EST: gi|207827222|gb|GD799101.1|GD799101
EST:     TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAG                         ACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACGGTAATGTTTGAG
genomic: TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAGgtactaatct ... aaatatccagACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACGGTAATGTTTGAG
EST: gi|192300195|gb|FG989317.1|FG989317
EST:     TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAG                         ACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACGGTAATGTTTGAG
genomic: TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAGgtactaatct ... aaatatccagACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACGGTAATGTTTGAG
EST: gi|192318394|gb|FK006514.1|FK006514
EST:     TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAG                         ACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACGGTAATGTTTGAG
genomic: TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAGgtactaatct ... aaatatccagACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACGGTAATGTTTGAG
EST: gi|21887784|gb|BQ740997.1|BQ740997
EST:     TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAG                         ACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACGGTAATGTTT
genomic: TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAGgtactaatct ... aaatatccagACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACGGTAATGTTT
EST: gi|151404275|gb|EV274085.1|EV274085
EST:     TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAG                         ACACCCATACTATGGTCCCATGGGGCTGGTTGATAGAACGGTAATGTTTGA
genomic: TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAGgtactaatct ... aaatatccagACACCCATACTATGGTCCCATGGG-CTGGTTGATAGAACGGTAATGTTTGA
EST: gi|298174387|gb|HO017723.1|HO017723
EST:     TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAG                         ACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACGGTAA
genomic: TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAGgtactaatct ... aaatatccagACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACGGTAA
EST: gi|298179959|gb|HO025174.1|HO025174
EST:     TTCCATTCAATTCATCTATCATAGAACAAATTACACCAGAGGCAAAGCAG                         ACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACG
genomic: TTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAGgtactaatct ... aaatatccagACACCCATACTATGGTCCCATGGGCTGGTTGATAGAACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTACTGTACCCTAAAACTTTAGGTGGAGGTGCAGTCTTTAGTGGTTGGGTTCCATTCAATTCATCTATTATAGAACAAATTACACCAGAGGCAAAGCAGgtactaatcttcagtagtagtatgtgtgcgaccttaatatttttgtctcggggttccttttttgtcaagcttagctattttccgtccattttcttcaaga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG