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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAAACACAATTGAAGGAACGGTTTGTGTACAAAGCCTGGTCCCGCCAACTTTACTGAGCCTGCGTGATGAGAGCCAGGAGAAAAATAGGAAGAAAAGgtaccaatgcaatgctgactcattgtttttctcttctctgttgtcaacgattgagttccatagccgtactggaaaaaaaaattaattttgattttattat...

Basic information

species Glycine max
transcript GLYMA17G01190.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193353279|gb|FK316051.1|FK316051
EST:     ACTTTACTGAGCCTGCGTGATGAGAGCCAGGAGAAAAATAGGAAGAAAAG                         GGATGACTTCCTCTCTAAGGGGTTCAAATTGAACATTGTAAGCGGGAAAAA
genomic: ACTTTACTGAGCCTGCGTGATGAGAGCCAGGAGAAAAATAGGAAGAAAAGgtaccaatgc ... tttttggcagGGATGACTTCCTCTCTAAGGGGTTCAAATTGA-CATTGTAAGCGGGAAAAA
EST: gi|208040351|gb|GD842103.1|GD842103
EST:     ACTTTACTGAGCCTGCGTGATGAGAGCCAGGAGAAAAATAGGAAGAAAAG                         GGATGACTTCCTCTCTAAGGGGTTCAAATTGACATTGTAAGCGGGAAAAAT
genomic: ACTTTACTGAGCCTGCGTGATGAGAGCCAGGAGAAAAATAGGAAGAAAAGgtaccaatgc ... tttttggcagGGATGACTTCCTCTCTAAGGGGTTCAAATTGACATTGTAAGCGGGAAAAAT
EST: gi|22933137|gb|BU550276.1|BU550276
EST:     TGAGAGCCAGGAGAAAAATAGGAAGAAAAG                         GGATGACTTCCTCTCTAAGGGGTTCAAATTGACATTGTAAGCGGGAAAAAT
genomic: TGAGAGCCAGGAGAAAAATAGGAAGAAAAGgtaccaatgc ... tttttggcagGGATGACTTCCTCTCTAAGGGGTTCAAATTGACATTGTAAGCGGGAAAAAT
EST: gi|193346274|gb|FK309766.1|FK309766
EST:     ACTTTACTGAGCCTGCGTGATGAGAGCCAGGAGAAAAATAGGAAGAAAAG                         GGATGACTTCCTCTCTAAGGGGTTCAAATTGACATTGTAAGCGGGAAAAAT
genomic: ACTTTACTGAGCCTGCGTGATGAGAGCCAGGAGAAAAATAGGAAGAAAAGgtaccaatgc ... tttttggcagGGATGACTTCCTCTCTAAGGGGTTCAAATTGACATTGTAAGCGGGAAAAAT
EST: gi|193493073|gb|FK463449.1|FK463449
EST:     ACTTTACTGAGCCTGCGTGATGAGAGCCAGGAGAAAA-TAGGAAGAAAAG                         GGATGACTTCCTCTCTAAGGGGTTCAAATTGACATTGTAAGCGGGAAAAAT
genomic: ACTTTACTGAGCCTGCGTGATGAGAGCCAGGAGAAAAATAGGAAGAAAAGgtaccaatgc ... tttttggcagGGATGACTTCCTCTCTAAGGGGTTCAAATTGACATTGTAAGCGGGAAAAAT
EST: gi|207750502|gb|GD725589.1|GD725589
EST:     ACTTTACTGAGCCTGCGTGATGAGAGCCAGGAGAAAAATAGGAAGAAAAG                         GGATGACTTCCTCT
genomic: ACTTTACTGAGCCTGCGTGATGAGAGCCAGGAGAAAAATAGGAAGAAAAGgtaccaatgc ... tttttggcagGGATGACTTCCTCT
EST: gi|193340558|gb|FK305855.1|FK305855
EST:     ACTTTACTGAGCCTGCGTGATGAGAGCCAGGAGAAAAATAGGAAGAAAAG                         GGATGACTTCCTCTCTAAGGGGTTCAAATTGACATTGTAAGCGGGAAAAAT
genomic: ACTTTACTGAGCCTGCGTGATGAGAGCCAGGAGAAAAATAGGAAGAAAAGgtaccaatgc ... tttttggcagGGATGACTTCCTCTCTAAGGGGTTCAAATTGACATTGTAAGCGGGAAAAAT
EST: gi|193516298|gb|FK472538.1|FK472538
EST:     ACTTTACTGAGCCTGCGTGATGAGAGCCAGGAGAAAAATAGGAAGAAAAG                         GGATGACTTCCTCTCTAAGGGGTTCAAATTGACATTGTAAGCGGGAAAAAT
genomic: ACTTTACTGAGCCTGCGTGATGAGAGCCAGGAGAAAAATAGGAAGAAAAGgtaccaatgc ... tttttggcagGGATGACTTCCTCTCTAAGGGGTTCAAATTGACATTGTAAGCGGGAAAAAT
EST: gi|208147056|gb|GD949301.1|GD949301
EST:     CTTTACTGAGCCTGCGTGATGAGTAGCCAGGAGAAAA-TAGGAAGAAAAG                         GGATGACTTCCTCTCTAAGGGGTTCAAATTGACATTGTAAGCG
genomic: CTTTACTGAGCCTGCGTGATGAG-AGCCAGGAGAAAAATAGGAAGAAAAGgtaccaatgc ... tttttggcagGGATGACTTCCTCTCTAAGGGGTTCAAATTGACATTGTAAGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGGAAACACAATTGAAGGAACGGTTTGTGTACAAAGCCTGGTCCCGCCAACTTTACTGAGCCTGCGTGATGAGAGCCAGGAGAAAAATAGGAAGAAAAGgtaccaatgcaatgctgactcattgtttttctcttctctgttgtcaacgattgagttccatagccgtactggaaaaaaaaattaattttgattttattat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA