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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattgattgttaggaagtagtttttatttatataggaaaaaaaaagttgatggaatgaaacaggctcctatagattgacagtggagaatattaatttcagACCCATGGAGTGCTAAATGCTGTGAGCTGGGGCATATTGATGCCAACGGGTGCCATAATCGCAAGGTACTTGAAGGTGTTCAAGTCTGCAGACCCTACTT

Basic information

species Glycine max
transcript GLYMA17G01170.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254329122|gb|GR833494.1|GR833494
EST:     CTGGTTCCTCCACTCAGCCAACCGGAAATTCACGCCAAAGAAGAAGAAAC                         ACCCATGGAGTGCTAAATGCTGTGAGCTGGGGCATATTGATGCCAACGGGT
genomic: CTGGTTCCTCCACTCAGCCAACCGGAAATTCACGCCAAAGAAGAAGAAACgtaagcacca ... ttaatttcagACCCATGGAGTGCTAAATGCTGTGAGCTGGGGCATATTGATGCCAACGGGT
EST: gi|6228016|gb|AW156544.1|AW156544
EST:     CTGGTTCCTCCACTCAGCCAACCGGAAATTCACGCCAAAGAAGAAGAAAC                         ACCCATGGAGTGCTAAATGCTGTGAGCTGGGGCATATTGATGCCAACGGGT
genomic: CTGGTTCCTCCACTCAGCCAACCGGAAATTCACGCCAAAGAAGAAGAAACgtaagcacca ... ttaatttcagACCCATGGAGTGCTAAATGCTGTGAGCTGGGGCATATTGATGCCAACGGGT
EST: gi|254348416|gb|GR852095.1|GR852095
EST:     CTGGTTCCTCCACTCAGCCAACCGGAAATTCACGCCAAAGAAGAAGAAAC                         ACCCATGGAGTGCTAAATGCTGTGAGCTGGGGCATATTGATGCCAACGGGT
genomic: CTGGTTCCTCCACTCAGCCAACCGGAAATTCACGCCAAAGAAGAAGAAACgtaagcacca ... ttaatttcagACCCATGGAGTGCTAAATGCTGTGAGCTGGGGCATATTGATGCCAACGGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgatggaatgaaacaggctcctatagattgacagtggagaatattaatttcagACCCATGGAGTGCTAAATGCTGTGAGCTGGGGCATATTGATGCCAACGGGTGCCATAATCGCAAGGTACTTGAAGGTGTTCAAGTCTGCAGACCCTACTT
                                           tattaat  putative branch site (score: 2)
 agaatattaatttca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aattgattgttaggaagtagtttttatttatataggaaaaaaaaagttgatggaatgaaacaggctcctatagattgacagtggagaatattaatttcagACCCATGGAGTGCTAAATGCTGTGAGCTGGGGCATATTGATGCCAACGGGTGCCATAATCGCAAGGTACTTGAAGGTGTTCAAGTCTGCAGACCCTACTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - -gttgatg