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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatatttttacagggttctcacttgaaataaatttgggaagaaaaatccaaatttcttcttgtttcccctggctgaaagtcaaactcttgccattgcagGCTTTCAAAAAGCTGACAAGATTTTTTAAATCCTTGGGAGTGAAGGCAATTTTTGATACAAGTTGTAGTAGAGATTTGACCCTTGTCGAATCTTGTGTGG

Basic information

species Glycine max
transcript GLYMA17G01120.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6072667|gb|AW102054.1|AW102054
EST:     CCCAGTCAAGGGCTTCTATTGCTTTTCATTTTGGCATTTCTCCAATTCAG                         GCTTTCAAAAAGCTGACAAGATTTTTTAAATCCTTGGGAGTGAAGGCAATT
genomic: CCCAGTCAAGGGCTTCTATTGCTTTTCATTTTGGCATTTCTCCAATTCAGgtgacacttt ... gccattgcagGCTTTCAAAAAGCTGACAAGATTTTTTAAATCCTTGGGAGTGAAGGCAATT
EST: gi|192331967|gb|FK024511.1|FK024511
EST:     CCCAGTCAAGGGCTTCTATTGCTTTTCATTTTGGCATTTCTCCAATTCAG                         GCTTTCAAAAAGCTGACAAGATTTTTTAAATCCTTGGGAGTGAAGGCAATT
genomic: CCCAGTCAAGGGCTTCTATTGCTTTTCATTTTGGCATTTCTCCAATTCAGgtgacacttt ... gccattgcagGCTTTCAAAAAGCTGACAAGATTTTTTAAATCCTTGGGAGTGAAGGCAATT
EST: gi|193357782|gb|FK321034.1|FK321034
EST:     TTTTCATTTTGGCATTTCTCCAATTCAG                         GCTTTCAAAAAGCTGACAAGATTTTTTAAATCCTTGGGAGTGAAGGCAATT
genomic: TTTTCATTTTGGCATTTCTCCAATTCAGgtgacacttt ... gccattgcagGCTTTCAAAAAGCTGACAAGATTTTTTAAATCCTTGGGAGTGAAGGCAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatccaaatttcttcttgtttcccctggctgaaagtcaaactcttgccattgcagGCTTTCAAAAAGCTGACAAGATTTTTTAAATCCTTGGGAGTGAAGGCAATTTTTGATACAAGTTGTAGTAGAGATTTGACCCTTGTCGAATCTTGTGTGG
                                        ctcttgcc  CT-rich tract
     aaatttctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaatatttttacagggttctcacttgaaataaatttgggaagaaaaatccaaatttcttcttgtttcccctggctgaaagtcaaactcttgccattgcagGCTTTCAAAAAGCTGACAAGATTTTTTAAATCCTTGGGAGTGAAGGCAATTTTTGATACAAGTTGTAGTAGAGATTTGACCCTTGTCGAATCTTGTGTGG

- - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - atccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaaact