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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTAAGAAAGTGGAGCTGATTTCACCCTTGCCAAAACCTCCAGAGGAGAAAGAAGAACCACCCAAAGAAGAACCACCAAAAGAGGAGAAAAAATATGAGgtaaatcattctcttcttgcttgcttctaagttctatctgttccataggtgcaatgaatattcagcaagcacgataagatactgcagtcaatcattctca...

Basic information

species Glycine max
transcript GLYMA17G01010.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193485865|gb|FK451226.1|FK451226
EST:     AGAGGAG-AAAAATATGAG                         CCTCCTCCTGTGGTAACAGTTGTCCTAAAAGTTCGAATGCATTGTGAAGCA
genomic: AGAGGAGAAAAAATATGAGgtaaatcatt ... tgctcgtcagCCTCCTCCTGTGGTAACAGTTGTCCTAAAAGTTCGAATGCATTGTGAAGCA
EST: gi|193493160|gb|FK460022.1|FK460022
EST:     AGAGGAGAAAAAATATGAG                         CCTCCTCCTGTGGTAACAGTTGTCCTAAAAGTTCGAATGCATTGTGAAGCA
genomic: AGAGGAGAAAAAATATGAGgtaaatcatt ... tgctcgtcagCCTCCTCCTGTGGTAACAGTTGTCCTAAAAGTTCGAATGCATTGTGAAGCA
EST: gi|193633839|gb|FK582011.1|FK582011
EST:     GAGGAG-AAAAATATGAG                         CCTCCTCCTGTGGTAACAGTTGTCCTAAAAGTTCGAATGCATTGTGAAGCA
genomic: GAGGAGAAAAAATATGAGgtaaatcatt ... tgctcgtcagCCTCCTCCTGTGGTAACAGTTGTCCTAAAAGTTCGAATGCATTGTGAAGCA
EST: gi|208303156|gb|GE101425.1|GE101425
EST:     AGGAAGAACCACCCAAAGAAGAACCACC-AAAGAGGAGAAAAAATATGAG                         CCTCCTCCTGTGGTAACAGTTGTCCTAAAAGTTCGAATGCATTGTGAAGCA
genomic: AAGAAGAACCACCCAAAGAAGAACCACCAAAAGAGGAGAAAAAATATGAGgtaaatcatt ... tgctcgtcagCCTCCTCCTGTGGTAACAGTTGTCCTAAAAGTTCGAATGCATTGTGAAGCA
EST: gi|193592506|gb|FK545668.1|FK545668
EST:     AGAGGAG-AAAAATATGAG                         CCTCCTCCTGTGGTAACAGTTGTCCTAAAAGTTCGAATGCATTGTGAAGCA
genomic: AGAGGAGAAAAAATATGAGgtaaatcatt ... tgctcgtcagCCTCCTCCTGTGGTAACAGTTGTCCTAAAAGTTCGAATGCATTGTGAAGCA
EST: gi|207720462|gb|GD702233.1|GD702233
EST:     AAGAACCACCCAAAGAAGAACCACCAAAAGAGGAGAAAAAATATGAG                         CCTCCTCCTGTGGTAACAGTTGTCCTAAAAGTTCGAATGCATTGTGAAGCA
genomic: AAGAACCACCCAAAGAAGAACCACCAAAAGAGGAGAAAAAATATGAGgtaaatcatt ... tgctcgtcagCCTCCTCCTGTGGTAACAGTTGTCCTAAAAGTTCGAATGCATTGTGAAGCA
EST: gi|193514103|gb|FK466541.1|FK466541
EST:     CCAAAAGAGGAG-AAAAATATGAG                         CCTCCTCCTGTGGTAACAGTTGTCCTAAAAGTTCGAATGCATTGTGAAGCA
genomic: CCAAAAGAGGAGAAAAAATATGAGgtaaatcatt ... tgctcgtcagCCTCCTCCTGTGGTAACAGTTGTCCTAAAAGTTCGAATGCATTGTGAAGCA
EST: gi|207787526|gb|GD759322.1|GD759322
EST:     AGGAGAAAAAATATGAG                         CCTCCTCCTGTGGTAACAGTTGTCCTAAAAGTTCGAATGCATTGTGAAGCA
genomic: AGGAGAAAAAATATGAGgtaaatcatt ... tgctcgtcagCCTCCTCCTGTGGTAACAGTTGTCCTAAAAGTTCGAATGCATTGTGAAGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTAAGAAAGTGGAGCTGATTTCACCCTTGCCAAAACCTCCAGAGGAGAAAGAAGAACCACCCAAAGAAGAACCACCAAAAGAGGAGAAAAAATATGAGgtaaatcattctcttcttgcttgcttctaagttctatctgttccataggtgcaatgaatattcagcaagcacgataagatactgcagtcaatcattctca

- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA