1 5' 3' | 2 5' 3' | 3 5' 3' |
...atatcctctatgattaaaattaagtgcctgcattattttactgctgaaagccattgatgtctacattgagggtaactattttaatctaatatatatgtagGATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAGCCTCCTCAATCACCAGACTCGAGTTATGATAACTTATATCTTAGTTCTGAAGATTATG
species | Glycine max |
transcript | GLYMA17G00990.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGGGCCCAAGATGATGCTGGGGATGCTTACAACATCTTGGACTTACAG GATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAGCCTCCTCAAEST: gi|58023073|gb|CX709814.1|CX709814
genomic: CTTGGGCCCAAGATGATGCTGGGGATGCTTACAACATCTTGGACTTACAGgtatttcttt ... atatatgtagGATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAGCCTCCTCAA
EST: CTTGGGCCCAAGATGATGCTGGGGATGCTTACAACATCTTGGACTTACAG GATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAGCCTCCTCAAEST: gi|57574556|gb|CX547531.1|CX547531
genomic: CTTGGGCCCAAGATGATGCTGGGGATGCTTACAACATCTTGGACTTACAGgtatttcttt ... atatatgtagGATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAGCCTCCTCAA
EST: CTTGGGCCCAAGATGATGCTGGGGATGCTTACAACATCTTGGACTTACAG GATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAGCCTCCTCAA
genomic: CTTGGGCCCAAGATGATGCTGGGGATGCTTACAACATCTTGGACTTACAGgtatttcttt ... atatatgtagGATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAGCCTCCTCAA
gaaagccattgatgtctacattgagggtaactattttaatctaatatatatgtagGATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAGCCTCCTCAATCACCAGACTCGAGTTATGATAACTTATATCTTAGTTCTGAAGATTATG
atctaat putative branch site (score: 3)
taactattttaatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatcctctatgattaaaattaagtgcctgcattattttactgctgaaagccattgatgtctacattgagggtaactattttaatctaatatatatgtagGATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAGCCTCCTCAATCACCAGACTCGAGTTATGATAACTTATATCTTAGTTCTGAAGATTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - taagtgc
- - - - - - - - - - - - - - tgcatta
- - - - - - - - - - - - - - - - - - - - ctgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaggg