1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gccaagctcaaagaatgttttgtttttgactccttctaatcattagttgaatctaggattcataattttgttctgctctgcaatgtatgttgtttttcagGACTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCCCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCG
species | Glycine max |
transcript | GLYMA17G00910.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGGGCAG -ACTCTTATGCCATTCGAAGCTTTGAGAEST: gi|254323254|gb|GR840059.1|GR840059
genomic: TATGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAGgtagtgttcc ... tgtttttcagGACTCTTATGCCATTCGAAGCTTTGAGA
EST: TATGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAG GACTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCCCAAAATGCTEST: gi|6963645|gb|AW432338.1|AW432338
genomic: TATGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAGgtagtgttcc ... tgtttttcagGACTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCCCAAAATGCT
EST: GTCATAACAAGAGATGAGCAG GACTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCCCAAAATGCT
genomic: GTCATAACAAGAGATGAGCAGgtagtgttcc ... tgtttttcagGACTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCCCAAAATGCT
gttgaatctaggattcataattttgttctgctctgcaatgtatgttgtttttcagGACTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCCCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCG
ttgtttttc CT-rich tract
attcataattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccaagctcaaagaatgttttgtttttgactccttctaatcattagttgaatctaggattcataattttgttctgctctgcaatgtatgttgtttttcagGACTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCCCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT