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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttctttcaatcatcatgccatgccttctcttcaaatttacgtccttagcttgatgatgaatttattatgtattctgtggtcaggtgtgaaaataatggaccacctttggtgaagtggacacatatataattgataagaatacttaatctctctctctatgtgttttttgggtacagATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA

Basic information

species Glycine max
transcript GLYMA17G00910.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213587273|gb|DB965935.1|DB965935
EST:     CATTTCGGACGCACGCTCCCCATCCATGTCTACTTGTGTAAAATCCCGAG                         ATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCA
genomic: CATTTCGGACGCACGCTCCCCATCCATGTCTACTTGTGTAAAATCCCGAGgtatttcttt ... ttgggtacagATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCA
EST: gi|18730350|gb|BM525828.1|BM525828
EST:     CATTTCGGACGCACGCTCCCCATCCATGTCTACTTGTGTAAAATCCCGAG                         ATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCA
genomic: CATTTCGGACGCACGCTCCCCATCCATGTCTACTTGTGTAAAATCCCGAGgtatttcttt ... ttgggtacagATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCA
EST: gi|9986219|gb|BE660327.1|BE660327
EST:     CATTTCGGACGCACGCTCCCCATCCATGTCTACTTGTGTAAAATCCCGAG                         ATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCA
genomic: CATTTCGGACGCACGCTCCCCATCCATGTCTACTTGTGTAAAATCCCGAGgtatttcttt ... ttgggtacagATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCA
EST: gi|298194892|gb|HO043364.1|HO043364
EST:     CATTTCGGACGCACGCTCCCCATCCATGTCTACTTGTGTAAAATCCCGAG                         ATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCA
genomic: CATTTCGGACGCACGCTCCCCATCCATGTCTACTTGTGTAAAATCCCGAGgtatttcttt ... ttgggtacagATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCA
EST: gi|192294916|gb|FG986639.1|FG986639
EST:     CATTTCGGACGCACGCTCCCCATCCATGTCTACTTGTGTAAAATCCCGAG                         ATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCA
genomic: CATTTCGGACGCACGCTCCCCATCCATGTCTACTTGTGTAAAATCCCGAGgtatttcttt ... ttgggtacagATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCA
EST: gi|213613699|gb|DB963345.1|DB963345
EST:     CATTTCGGACGCACGCTCCCCATCCATGTCTACTTGTGTAAAATCCCGAG                         ATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCA
genomic: CATTTCGGACGCACGCTCCCCATCCATGTCTACTTGTGTAAAATCCCGAGgtatttcttt ... ttgggtacagATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCA
EST: gi|19452347|gb|BM953757.1|BM953757
EST:     CATTTCGGACGCACGCTCCCCATCCATGTCTACTTGTGTAAAATCCCGAG                         ATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCA
genomic: CATTTCGGACGCACGCTCCCCATCCATGTCTACTTGTGTAAAATCCCGAGgtatttcttt ... ttgggtacagATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCA
EST: gi|207748253|gb|GD719922.1|GD719922
EST:     CATTTCGGACGCACGCTCCCCATCCATGTCTACTTATGTAAAATCCCGAG                         ATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCA
genomic: CATTTCGGACGCACGCTCCCCATCCATGTCTACTTGTGTAAAATCCCGAGgtatttcttt ... ttgggtacagATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCA
EST: gi|14259973|gb|BG882881.1|BG882881
EST:     CATTTCGGACGCACGCTCCCCATCCATGTCTACTTGTGTAAAATCCCGAG                         ATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCA
genomic: CATTTCGGACGCACGCTCCCCATCCATGTCTACTTGTGTAAAATCCCGAGgtatttcttt ... ttgggtacagATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatataattgataagaatacttaatctctctctctatgtgttttttgggtacagATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA
                   acttaat  putative branch site (score: 4)
                         tctctctctctatgtg  CT-rich tract
     taattgataagaatac  TA-rich tract