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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGACAAGAAGATCATGAGAGAGATACTAGCGATAATGAGGCATATTGCTTCAAGTATCACTTATTTTCCATGCCTGGATGGGACCAACCTTgtaaggaccatgtgttttgccaatgatcattatgatcatgagatagagttgtcattccctgagcatcttgtctcttgctgctacaatttctgtttatag

Basic information

species Glycine max
transcript GLYMA16G23270.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23270.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0010g02430.t01 (Vitis vinifera), 5'ss of exon 5
------------AGTGACAAGAAGATCATGAGAGAGATACTAGCGATAATGAGGCATATTGCTTCAAGTATCACTTATTTTCCATGCCTGGATGGGACCAACCTTgtaaggaccatgtgttttgccaatgatcattatgatcatgagatagagttgtcattccctgagcatcttgtctcttgctgctacaatttctgtttatag
            ||||||||  |||| ||||||||||||| ||| || ||| | || |||||||| || ||||||||||| |||||| | ||||     |||| ||||| | |||||       ||||  | || | |  ||  ||  | | || || |||      | ||    ||||    ||  |   ||| |  ||  ||
TCAAGGGAGAAGAGTGACAAAGAGATTATGAGAGAGATACAAGCAATCATGCGACAGATTGCTTCCAGCATCACTTATTTGCCATGCATCGATG-----AACCCTgtaatg-ccatgc----caccaacta-cacttttttccggatgttgggtggtgatttttactg-atggaatctccacttgtgatggtttgtcctt-cag